RNA id: TU606544


Basic Information

Item Value
RNA id TU606544
length 612
lncRNA type antisense_over
GC content 0.62
exon number 1
gene id G535695
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65443501 ~ 65444112 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTATTCCAGTCGGCCTGCCCGTTGGGGGAGGAGGCAGAGTGGGGCCCTGCAGGAGAGCGGCTCTCGTCAGGCTCCTGCTTCACCCTAACGGGTGGCAATGGGGCATTCTGGGGGCCCGAGGTAGAGTAACTACCAAATGGATTCGCTGGGAGGTGGGAGGCACCCTGTTGAAGAGCCAGTGTCTGCTTGCGGAGGTACTCAAGACCACTagcccctccctcttcctcctcgctCCCCTCATCTCCATCCATCATCTCCTCATCGTCATCTTCATCCCCTGAATCCCGGCCTCTGTCCTCCTCGTCCTCCCTCTCTGAGTCCACACTGCTCTGGTTAGAGACCCGGGACAGTGGGCCTCCTCTGGGTATCCCTGAACCACCTCCAACCAGTGCCTTGCCCATGAAGCCAGCTCCAGAGGCCCTAGCCGCAGCTAGGATGGCCTGCTGCGCTGCTACCTGTTGGGTGTACATGATGTGGGCCTCGCGGAGCCGCCTCTCCTTGCGCTCCATCTCCAGCCTGGCCTGCTGCTGGCGCTGCAGCTGCTCCATGACAGCCTCGAGCTTCATTCCTCCTGCCGTGCCTGCCTGAGGATAGACACCCCCCAGACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606542 lncRNA downstream 2792 65440551 ~ 65440709 (-) True G535693
TU606532 lncRNA downstream 6671 65423954 ~ 65436830 (-) True G535683
TU606448 lncRNA downstream 13094 65414573 ~ 65430407 (-) True G535604
TU606511 lncRNA downstream 50743 65392537 ~ 65392758 (-) True G535663
TU606502 lncRNA downstream 68723 65374525 ~ 65374778 (-) True G535654
TU606552 lncRNA upstream 15664 65459776 ~ 65460005 (-) True G535703
TU606562 lncRNA upstream 25693 65469805 ~ 65470008 (-) True G535713
TU606594 lncRNA upstream 46979 65491091 ~ 65529060 (-) True G535731
TU606565 lncRNA upstream 55844 65499956 ~ 65554981 (-) True G535714
TU606655 lncRNA upstream 142211 65586323 ~ 65586631 (-) True G535791
XM_036980695.1 mRNA downstream 309676 65113278 ~ 65133825 (-) True LOC110526352
XM_021607250.2 mRNA downstream 309729 65113278 ~ 65133772 (-) False LOC110526352
XM_021607248.2 mRNA downstream 312054 65113278 ~ 65131447 (-) False LOC110526352
XM_021607249.2 mRNA downstream 312054 65113278 ~ 65131447 (-) False LOC110526352
XM_021607245.2 mRNA downstream 469734 64963833 ~ 64973767 (-) True LOC110526350
XM_021607266.2 mRNA upstream 81560 65525672 ~ 65546447 (-) False LOC110526361
XR_002473936.2 mRNA upstream 82449 65526561 ~ 65546448 (-) True LOC110526361
XM_036980721.1 mRNA upstream 155985 65600097 ~ 65765381 (-) False LOC110526365
XM_036980720.1 mRNA upstream 155985 65600097 ~ 65765382 (-) False LOC110526365
XM_036980722.1 mRNA upstream 155985 65600097 ~ 65765382 (-) False LOC110526365
TU605344 other downstream 557969 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 828705 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 943887 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 1617976 63823899 ~ 63825525 (-) False igdcc3
TU603463 other downstream 2453223 62985529 ~ 62990278 (-) False LOC110526310
TU606664 other upstream 179877 65623989 ~ 65625972 (-) True LOC110526365
TU607101 other upstream 818374 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 833090 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 1056276 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 1105255 66549367 ~ 66549974 (-) True G536630

Expression Profile