RNA id: TU605710



Basic Information


Item Value
RNA id TU605710
length 248
lncRNA type intronic
GC content 0.42
exon number 1
gene id G534921
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65449775 ~ 65450022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCTGAGTGGTTTGGGTGAAAGAGGCAACACGCGATTAGCACCGACTCCACCATTCGAATAGCATTCTTTCCATCAGAGAGTAGTCTGCACTCAATGTAACTGTGTTTAGTTTGTCATGGTATAAAAACAAATACAGAACCTGTTTTAAGGTGTCAGATATACAGAGATTTAGAATGGTGACTTGAGCCTGACTAATCTCGTGAGATGATCTAACCATAGGCTTATAGGAAGGCTCCTTTATGGGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU605709 lncRNA upstream 82 65449492 ~ 65449693 (+) True G534920
TU605703 lncRNA upstream 8799 65440499 ~ 65440976 (+) False LOC110526360
TU605704 lncRNA upstream 8906 65440499 ~ 65440869 (+) True LOC110526360
TU605681 lncRNA upstream 36790 65412372 ~ 65412985 (+) True G534894
TU605651 lncRNA upstream 73394 65375571 ~ 65376381 (+) False G534870
TU605773 lncRNA downstream 134250 65584272 ~ 65584519 (+) True G534982
TU605775 lncRNA downstream 136173 65586195 ~ 65586907 (+) True G534984
TU605817 lncRNA downstream 185636 65635658 ~ 65642430 (+) True G535020
TU605925 lncRNA downstream 346012 65796034 ~ 65797422 (+) False G535118
TU605926 lncRNA downstream 346118 65796140 ~ 65797422 (+) True G535118
XM_021607265.2 mRNA upstream 8877 65434411 ~ 65440898 (+) False LOC110526360
XM_021607264.2 mRNA upstream 19375 65414289 ~ 65430400 (+) True LOC110526359
XM_036980718.1 mRNA upstream 42500 65403608 ~ 65407275 (+) True LOC110526358
XM_036980717.1 mRNA upstream 81198 65193659 ~ 65368577 (+) False LOC110526357
XM_021607271.2 mRNA downstream 125047 65575069 ~ 65580465 (+) True LOC110526364
XM_021607273.2 mRNA downstream 318761 65768783 ~ 65771390 (+) True LOC110526366
XM_021607282.2 mRNA downstream 324765 65774787 ~ 65792680 (+) False LOC110526368
XM_036980723.1 mRNA downstream 324765 65774787 ~ 65792680 (+) False LOC110526368
XM_021607284.2 mRNA downstream 326831 65776853 ~ 65792680 (+) False LOC110526368
TU605427 other upstream 288445 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 331819 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 602671 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 673439 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2110277 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 397601 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 1152763 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1563198 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1654284 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1654389 67104411 ~ 67104862 (+) False G537029

Expression Profile