RNA id: TU606789


Basic Information

Item Value
RNA id TU606789
length 1297
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G535905
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65795989 ~ 65797435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaATACCCTCAAACCAAAGCTGACAGTTTGCacttcatagtcattgtatcatttcaaatccaaagtgctggagtacagagccccccccccccaaatatatatttgtcattgtccaaatacttttggaccTCACTGTATGTATTCACAATGTATTGTTATTATTCCTGGTCCTACTCTGAATGTCATCCTGGAGGACTGAATGTGGCCCCATGGGCGAAAATGGAAGATTCCTGATGAGTTCCCTAAGACAAATGTCACAGTAGACATTAAACTAATGTACATTCATCTACCACTCTGTTATTTTATGTTCATTCTCTCAGGTCCAGTAAGAGGACATCCCCTGAAGAGATTTACAGCGATATTTAAGGACatagatatgttttttttgttttgtttttatcttTAGTAAAATATCTATATTTGTGGTATTTAAGCAGATACTTTTTGGAAAATCTATAATATAAACACATTCCAAAGTAGTTCCTCAAGTGTAATATTTAGCAGCTGATggttcttgtttgtttgtgttgttacTGTGTTGGTTTGCATCCTCCGAGCCTTGAAAGATTTCCTTAATGTACGAGAGCACTTTTAGACAGCATGAGAAATCTTCTTCCCGCATGCGTGCCAGGGTTTTCTGTTGTGTCATTTTCGCCTTGAAATAAAGGTGCCTTAAAACTCGCAGCATTCATTTCCATAGTGAATAATGTatgtcagacagacaggtgcaGTTTCCATGAAGCAAACAGGTGTGTTGGCAGAGTTCTCATGCTAACCTCCCAAATCAGTCGTTTCCTTGGAGGAATGAGTGACACAGTAATTGTATTTTTCAGCACAGCGCTTGTTCTCTTCCTCCCTGCACTTATGAAAATGAAAGATCTTTTGAACCTTTCATGTCTCTCAGGAAACCACTTATGTAATCTACTTGGCTCCATTAAGCTGTAGCTGCAGTGTGTCAAGGCTGCTTGAGTGATTCTCTCTATTTTAATATTAAATTAATGtcacaaaataaaatataaatgttCTCTTTAGATGTCAATTTTTTGGGGACGTTTAAATGTCACTGACTCTTCTCATACAGCAAACAACTACTTTTGCTTATTTTTCGGTTCTGCCTGCGTCATTTCCTGCTGTACTAGGTTGGGGTGAGGTGTTTGCTGGAAGTGGGATTTCGCTGTGTGTCAGAGTCACATCAGAGGATGCCAGGGATCATGAGCTTGTTAATGACTGAGCAATGGGCAGAGGGAGGGAATTATTCTGTGAGGTGCcaaagtcaataaaaataaacaacTTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606662 lncRNA downstream 197329 65598469 ~ 65598810 (-) True G535798
TU606660 lncRNA downstream 199645 65596266 ~ 65596494 (-) True G535796
TU606655 lncRNA downstream 209508 65586323 ~ 65586631 (-) True G535791
TU606565 lncRNA downstream 241158 65499956 ~ 65554981 (-) True G535714
TU606594 lncRNA downstream 267079 65491091 ~ 65529060 (-) True G535731
TU606812 lncRNA upstream 43274 65840709 ~ 65842247 (-) True G535925
TU606827 lncRNA upstream 61593 65859028 ~ 65859247 (-) True G535934
TU606831 lncRNA upstream 74841 65872276 ~ 65872479 (-) True G535938
TU606840 lncRNA upstream 85419 65882854 ~ 65883080 (-) True G535946
TU606853 lncRNA upstream 100098 65897533 ~ 65930393 (-) True G535958
XM_021607286.2 mRNA downstream 471 65792819 ~ 65795668 (-) True LOC110526369
XM_036980720.1 mRNA downstream 30757 65600097 ~ 65765382 (-) False LOC110526365
XM_036980722.1 mRNA downstream 30757 65600097 ~ 65765382 (-) False LOC110526365
XM_036980721.1 mRNA downstream 30758 65600097 ~ 65765381 (-) False LOC110526365
XR_002473936.2 mRNA downstream 249691 65526561 ~ 65546448 (-) True LOC110526361
XM_021607278.2 mRNA upstream 638 65798073 ~ 65813747 (-) False LOC110526367
XM_021607281.2 mRNA upstream 638 65798073 ~ 65816129 (-) False LOC110526367
XM_021607277.2 mRNA upstream 638 65798073 ~ 65817404 (-) False LOC110526367
XM_021607274.2 mRNA upstream 638 65798073 ~ 65820337 (-) True LOC110526367
XM_021608121.2 mRNA upstream 29494 65826929 ~ 65828077 (-) True LOC110526945
TU606664 other downstream 170167 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 910607 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1181343 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 1296525 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 1970614 63823899 ~ 63825525 (-) False igdcc3
TU607101 other upstream 465051 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 479767 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 702953 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 751932 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 2344816 68142251 ~ 68144907 (-) True G538277

Expression Profile