RNA id: TU605925


Basic Information

Item Value
RNA id TU605925
length 1389
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G535118
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65796034 ~ 65797422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAAAACGTATGAATACAGAATAAGCAAAAATCAAACAAGCTAGTCCTTAAGTTGTATTCTTTCAAGAGAGTACAGGAGGAGTGTTTGGCACAGATAGATGTTGGGCAAgttgtttatttttattgactttgGCACCTCACAGAATAATTCCCTCCCTCTGCCCATTGCTCAGTCATTAACAAGCTCATGATCCCTGGCATCCTCTGATGTGACTCTGACACACAGCGAAATCCCACTTCCAGCAAACACCTCACCCCAACCTAGTACAGCAGGAAATGACGCAGGCAGAACCGAAAAATAAGCAAAAGTAGTTGTTTGCTGTATGAGAAGAGTCAGTGACATTTAAACGTCCCCAAAAAATTGACATCTAAAGAGaacatttatattttattttgtgaCATTAATTTAATATTAAAATAGAGAGAATCACTCAAGCAGCCTTGACACACTGCAGCTACAGCTTAATGGAGCCAAGTAGATTACATAAGTGGTTTCCTGAGAGACATGAAAGGTTCAAAAGATCTTTCATTTTCATAAGTGCAGGGAGGAAGAGAACAAGCGCTGTGCTGAAAAATACAATTACTGTGTCACTCATTCCTCCAAGGAAACGACTGATTTGGGAGGTTAGCATGAGAACTCTGCCAACACACCTGTTTGCTTCATGGAAACtgcacctgtctgtctgacatACATTATTCACTATGGAAATGAATGCTGCGAGTTTTAAGGCACCTTTATTTCAAGGCGAAAATGACACAACAGAAAACCCTGGCACGCATGCGGGAAGAAGATTTCTCATGCTGTCTAAAAGTGCTCTCGTACATTAAGGAAATCTTTCAAGGCTCGGAGGATGCAAACCAACACAgtaacaacacaaacaaacaagaaccATCAGCTGCTAAATATTACACTTGAGGAACTACTTTGGAATGTGTTTATATTATAGATTTTCCAAAAAGTATCTGCTTAAATACCACAAATATAGATATTTTACTAaagataaaaacaaaacaaaaaaaacatatctatGTCCTTAAATATCGCTGTAAATCTCTTCAGGGGATGTCCTCTTACTGGACCTGAGAGAATGAACATAAAATAACAGAGTGGTAGATGAATGTACATTAGTTTAATGTCTACTGTGACATTTGTCTTAGGGAACTCATCAGGAATCTTCCATTTTCGCCCATGGGGCCACATTCAGTCCTCCAGGATGACATTCAGAGTAGGACCAGGAATAATAACAATACATTGTGAATACATACAGTGAggtccaaaagtatttggacaatgacaaatatatatttggggggggggggctctgtactccagcactttggatttgaaatgatacaatgactatgaagtGCAAACTGTCAGCTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605817 lncRNA upstream 153604 65635658 ~ 65642430 (+) True G535020
TU605775 lncRNA upstream 209127 65586195 ~ 65586907 (+) True G534984
TU605773 lncRNA upstream 211515 65584272 ~ 65584519 (+) True G534982
TU605710 lncRNA upstream 346012 65449775 ~ 65450022 (+) True G534921
TU605709 lncRNA upstream 346341 65449492 ~ 65449693 (+) True G534920
TU605964 lncRNA downstream 26947 65824369 ~ 65824684 (+) True G535155
TU605965 lncRNA downstream 27575 65824997 ~ 65825435 (+) True G535156
TU605967 lncRNA downstream 29955 65827377 ~ 65827923 (+) True G535158
TU605971 lncRNA downstream 33613 65831035 ~ 65831237 (+) True G535162
TU605975 lncRNA downstream 46427 65843849 ~ 65844347 (+) True G535166
XM_021607282.2 mRNA upstream 3354 65774787 ~ 65792680 (+) False LOC110526368
XM_036980723.1 mRNA upstream 3354 65774787 ~ 65792680 (+) False LOC110526368
XM_021607284.2 mRNA upstream 3354 65776853 ~ 65792680 (+) False LOC110526368
XM_021607283.2 mRNA upstream 3354 65777416 ~ 65792680 (+) False LOC110526368
XM_021607285.2 mRNA upstream 3354 65777417 ~ 65792680 (+) True LOC110526368
XM_021607287.2 mRNA downstream 36337 65833759 ~ 65843569 (+) True LOC110526370
XM_021607289.2 mRNA downstream 150997 65948419 ~ 66035381 (+) True LOC110526373
XM_021607292.2 mRNA downstream 287697 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 287697 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 287697 66085119 ~ 66098315 (+) False LOC110526374
TU605427 other upstream 634704 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 678078 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 948930 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1019698 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2456536 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 50201 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 805363 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1215798 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1306884 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1306989 67104411 ~ 67104862 (+) False G537029

Expression Profile