RNA id: TU605965



Basic Information


Item Value
RNA id TU605965
length 439
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G535156
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65824997 ~ 65825435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcgggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgacaagagcaccttcttccacgtttggtgtctcccccaggtggcttgtggcaaactttaaccgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU605964 lncRNA upstream 313 65824369 ~ 65824684 (+) True G535155
TU605925 lncRNA upstream 27575 65796034 ~ 65797422 (+) False G535118
TU605926 lncRNA upstream 27575 65796140 ~ 65797422 (+) True G535118
TU605817 lncRNA upstream 182567 65635658 ~ 65642430 (+) True G535020
TU605775 lncRNA upstream 238090 65586195 ~ 65586907 (+) True G534984
TU605967 lncRNA downstream 1942 65827377 ~ 65827923 (+) True G535158
TU605971 lncRNA downstream 5600 65831035 ~ 65831237 (+) True G535162
TU605975 lncRNA downstream 18414 65843849 ~ 65844347 (+) True G535166
TU605960 lncRNA downstream 19537 65844972 ~ 65846257 (+) True G535151
TU605987 lncRNA downstream 51233 65876668 ~ 65876921 (+) True G535176
XM_021607282.2 mRNA upstream 32317 65774787 ~ 65792680 (+) False LOC110526368
XM_021607287.2 mRNA downstream 8324 65833759 ~ 65843569 (+) True LOC110526370
XM_021607289.2 mRNA downstream 122984 65948419 ~ 66035381 (+) True LOC110526373
XM_021607292.2 mRNA downstream 259684 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 259684 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 259684 66085119 ~ 66098315 (+) False LOC110526374
TU605427 other upstream 663667 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 707041 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 977893 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1048661 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2485499 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 22188 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 777350 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1187785 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1278871 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1278976 67104411 ~ 67104862 (+) False G537029

Expression Profile