RNA id: TU605967



Basic Information


Item Value
RNA id TU605967
length 547
lncRNA type antisense_over
GC content 0.56
exon number 1
gene id G535158
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65827377 ~ 65827923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGGCTGTGACCCTGGCCTCCAGGGCACTGAGCTGATCTTCTGTGTTCGCTGCTCTGGTCAGAGCTTCCTCCATCTTCTGAGTGatactctccatcctctccttgaCCTGGCTGACCCTTCGCTGACTCTCCCTGACCAGCTCAGCTGCCTCCAGGGCAATGCTGACCATGGCCTCCATCCTCCTGAGGGTCACCAGCAGACCCTCTGAGGTCACAAGCTGGGCTGCTACCTTCTCTGATCTACCTGGGTCCTCCACATGGTCTGTAGCCACAGCCACGTCCTTACGCTCCTTTGATGCCTCCTCCCCAGTCCAGCCAGGTCCCTCTCTCACCGTGTTGGTCTTCTTGTCTTTGTGAAGAACACCCACCCTGTCCTGAATGTATTTGTGCTCAGCTACGTCCTCCTGGGCAGTTCTCAGAGCTGACTCAAGGTGGCATACCTGCTCCCTAATCTTTGTGATGGTGTGCTTTGCCTGTTGGAGCTTGGAATCTGTATCAGTGAGGGTCttgctgggctgggtcagggtgtCTTCCGGCTTGACCTTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU605965 lncRNA upstream 1942 65824997 ~ 65825435 (+) True G535156
TU605964 lncRNA upstream 2693 65824369 ~ 65824684 (+) True G535155
TU605925 lncRNA upstream 29955 65796034 ~ 65797422 (+) False G535118
TU605926 lncRNA upstream 29955 65796140 ~ 65797422 (+) True G535118
TU605817 lncRNA upstream 184947 65635658 ~ 65642430 (+) True G535020
TU605971 lncRNA downstream 3112 65831035 ~ 65831237 (+) True G535162
TU605975 lncRNA downstream 15926 65843849 ~ 65844347 (+) True G535166
TU605960 lncRNA downstream 17049 65844972 ~ 65846257 (+) True G535151
TU605987 lncRNA downstream 48745 65876668 ~ 65876921 (+) True G535176
TU605988 lncRNA downstream 49020 65876943 ~ 65877244 (+) True G535177
XM_021607282.2 mRNA upstream 34697 65774787 ~ 65792680 (+) False LOC110526368
XM_021607287.2 mRNA downstream 5836 65833759 ~ 65843569 (+) True LOC110526370
XM_021607289.2 mRNA downstream 120496 65948419 ~ 66035381 (+) True LOC110526373
XM_021607292.2 mRNA downstream 257196 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 257196 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 257196 66085119 ~ 66098315 (+) False LOC110526374
TU605427 other upstream 666047 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 709421 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 980273 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1051041 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2487879 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 19700 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 774862 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1185297 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1276383 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1276488 67104411 ~ 67104862 (+) False G537029

Expression Profile