RNA id: TU605971



Basic Information


Item Value
RNA id TU605971
length 203
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G535162
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65831035 ~ 65831237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTGCACAGTGAGTGAATTACACTGATATCTGAGACAGATTCCCAGGCTGCCTACAAAAGCAAAACCTTACCATTTATAGACACTTTACAAGGGTTTTCCCCTGAAATATGTTTGTCGTCCTCATGCATGCTGAAAGATACAAACAATCATTAGTCTCCAGTTATAGATACAAAGCGGATTAGCAGGTTAACCAATGTTATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU605967 lncRNA upstream 3112 65827377 ~ 65827923 (+) True G535158
TU605965 lncRNA upstream 5600 65824997 ~ 65825435 (+) True G535156
TU605964 lncRNA upstream 6351 65824369 ~ 65824684 (+) True G535155
TU605925 lncRNA upstream 33613 65796034 ~ 65797422 (+) False G535118
TU605926 lncRNA upstream 33613 65796140 ~ 65797422 (+) True G535118
TU605975 lncRNA downstream 12612 65843849 ~ 65844347 (+) True G535166
TU605960 lncRNA downstream 13735 65844972 ~ 65846257 (+) True G535151
TU605987 lncRNA downstream 45431 65876668 ~ 65876921 (+) True G535176
TU605988 lncRNA downstream 45706 65876943 ~ 65877244 (+) True G535177
TU605993 lncRNA downstream 51489 65882726 ~ 65883012 (+) True G535182
XM_021607282.2 mRNA upstream 38355 65774787 ~ 65792680 (+) False LOC110526368
XM_021607287.2 mRNA downstream 2522 65833759 ~ 65843569 (+) True LOC110526370
XM_021607289.2 mRNA downstream 117182 65948419 ~ 66035381 (+) True LOC110526373
XM_021607292.2 mRNA downstream 253882 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 253882 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 253882 66085119 ~ 66098315 (+) False LOC110526374
TU605427 other upstream 669705 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 713079 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 983931 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1054699 64769147 ~ 64776336 (+) False LOC110526344
TU603064 other upstream 2491537 63338236 ~ 63339498 (+) False LOC100750227
TU605959 other downstream 16386 65847623 ~ 65849441 (+) True G535150
TU607370 other downstream 771548 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1181983 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1273069 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1273174 67104411 ~ 67104862 (+) False G537029

Expression Profile