RNA id: TU605959



Basic Information


Item Value
RNA id TU605959
length 818
RNA type TUCP
GC content 0.48
exon number 6
gene id G535150
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65847623 ~ 65849441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAAGCTCTCCCCAGTAACAAGGCCCTCTGTGCGGAGTGTGTGGATCAAGGTGCTGGCATGCTCCTTGTCTTCATCTGGGCAGTCAAGAGAACAGATCACGATCTTGCTCAACATCTCAGGCAGGAAGTGTTTGGGAGCCTTCATCTCTCTTACACAGTTCACAGCTTCATCAATGTTTTTGCTGTTCAGGTAATCGGTCACTATGGTCTCGGTCATCTTAAGCAACTCTTCCTTTGCAGGAGGCGGTTTCTTGGTGGTCTTTGGAGGTTTTTCCTGAATTGGAGGAGGGTTGGTTTTCAGACCAAGCAGAGGAGGCTGTCCCAGTGGTGGTGTTTGAGTGCGTGGAGGTTGAGCACTTGGCGGAATCATCGTTGGTATCTGTGGCTGCAACTTTGGGACTTGGTTTGTGTTGAGAAGGAATGACTGTGCCGGCCTTAGACTGATCTCATCAGCGTTGAGCGATCCTTTCTTGATGAAACGCGGTGCCATGTCCTTAGACTGAGCCTGCTGTTGTTGCGAGTGATTCTGGTTCTGGAAGATTTGATTCTGACGAATCTGGTTAATCGTCTTTGGTCCATTATCGATAAAAGCTTTGCGAGCCACCCAATTGTTCTCTCGCAACTCCACTGAATCCTGCACCAGGAAACGAATCCTTGCCGGCAAGTCCTTGTTGTTCATTAAGGATTTCATACGGCCAAAGTACTGATCCATTAAAGACCTAGCCTTTTCATGATCGAGTCTAGGCCCCACTGTTCTCATTATCTGACAGAGGCACTCCAAATCTTCCCCCATATCCTTAAGTTGGACTCTCTTCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU605960 lncRNA upstream 1366 65844972 ~ 65846257 (+) True G535151
TU605975 lncRNA upstream 3276 65843849 ~ 65844347 (+) True G535166
TU605971 lncRNA upstream 16386 65831035 ~ 65831237 (+) True G535162
TU605967 lncRNA upstream 19700 65827377 ~ 65827923 (+) True G535158
TU605965 lncRNA upstream 22188 65824997 ~ 65825435 (+) True G535156
TU605987 lncRNA downstream 27227 65876668 ~ 65876921 (+) True G535176
TU605988 lncRNA downstream 27502 65876943 ~ 65877244 (+) True G535177
TU605993 lncRNA downstream 33285 65882726 ~ 65883012 (+) True G535182
TU606006 lncRNA downstream 48068 65897509 ~ 65930401 (+) True G535194
TU606182 lncRNA downstream 297144 66146585 ~ 66146855 (+) True G535358
XM_021607287.2 mRNA upstream 4054 65833759 ~ 65843569 (+) True LOC110526370
XM_021607282.2 mRNA upstream 54943 65774787 ~ 65792680 (+) False LOC110526368
XM_036980723.1 mRNA upstream 54943 65774787 ~ 65792680 (+) False LOC110526368
XM_021607284.2 mRNA upstream 54943 65776853 ~ 65792680 (+) False LOC110526368
XM_021607283.2 mRNA upstream 54943 65777416 ~ 65792680 (+) False LOC110526368
XM_021607289.2 mRNA downstream 98978 65948419 ~ 66035381 (+) True LOC110526373
XM_021607292.2 mRNA downstream 235678 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 235678 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 235678 66085119 ~ 66098315 (+) False LOC110526374
XM_036980728.1 mRNA downstream 243241 66092682 ~ 66098315 (+) True LOC110526374
TU605427 other upstream 686293 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 729667 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1000519 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1071287 64769147 ~ 64776336 (+) False LOC110526344
TU603025 other upstream 2503868 63308533 ~ 63343755 (+) True G532489
TU607370 other downstream 753344 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1163779 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1254865 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1254970 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 1254970 67104411 ~ 67104908 (+) True G537029

Expression Profile