RNA id: TU605988


Basic Information

Item Value
RNA id TU605988
length 302
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G535177
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65876943 ~ 65877244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGACCTAGTtcagctgcagctggcccagaacagagcggcacgttttgctcttaattgtaatcagagggctgataaaaaatactatgcatgcagtctctcttggctaagagttgaggagagactgactacatcacttcttcttttcacaagaaacattaatgtgatgaaaatcccaaattgtttgcatagtcaacttacacacagctctgacacacacacttatcccaccagacatgccaccaggggtcttttcacagtccccaaatccagaacaaattcaagaaagcatacagtattatat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605987 lncRNA upstream 22 65876668 ~ 65876921 (+) True G535176
TU605960 lncRNA upstream 30686 65844972 ~ 65846257 (+) True G535151
TU605975 lncRNA upstream 32596 65843849 ~ 65844347 (+) True G535166
TU605971 lncRNA upstream 45706 65831035 ~ 65831237 (+) True G535162
TU605967 lncRNA upstream 49020 65827377 ~ 65827923 (+) True G535158
TU605993 lncRNA downstream 5482 65882726 ~ 65883012 (+) True G535182
TU606006 lncRNA downstream 20265 65897509 ~ 65930401 (+) True G535194
TU606182 lncRNA downstream 269341 66146585 ~ 66146855 (+) True G535358
TU607084 lncRNA downstream 379440 66256684 ~ 66261444 (+) True G536174
TU607106 lncRNA downstream 399307 66276551 ~ 66276752 (+) True G536188
XM_021607287.2 mRNA upstream 33374 65833759 ~ 65843569 (+) True LOC110526370
XM_036980723.1 mRNA upstream 84263 65774787 ~ 65792680 (+) False LOC110526368
XM_021607289.2 mRNA downstream 71175 65948419 ~ 66035381 (+) True LOC110526373
XM_021607292.2 mRNA downstream 207875 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 207875 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 207875 66085119 ~ 66098315 (+) False LOC110526374
XM_036980728.1 mRNA downstream 215438 66092682 ~ 66098315 (+) True LOC110526374
TU605959 other upstream 27502 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 715613 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 758987 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1029839 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1100607 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 725541 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1135976 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1227062 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1227167 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 1227167 67104411 ~ 67104908 (+) True G537029

Expression Profile