RNA id: TU606006


Basic Information

Item Value
RNA id TU606006
length 300
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G535194
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65897509 ~ 65930401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaacataaagatataaaactgtattttttgtgaagaatcaacaacaagtgggacacaatcatgaagtctgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU605993 lncRNA upstream 14497 65882726 ~ 65883012 (+) True G535182
TU605988 lncRNA upstream 20265 65876943 ~ 65877244 (+) True G535177
TU605987 lncRNA upstream 20588 65876668 ~ 65876921 (+) True G535176
TU605960 lncRNA upstream 51252 65844972 ~ 65846257 (+) True G535151
TU605975 lncRNA upstream 53162 65843849 ~ 65844347 (+) True G535166
TU606182 lncRNA downstream 216184 66146585 ~ 66146855 (+) True G535358
TU607084 lncRNA downstream 326283 66256684 ~ 66261444 (+) True G536174
TU607106 lncRNA downstream 346150 66276551 ~ 66276752 (+) True G536188
TU607111 lncRNA downstream 352676 66283077 ~ 66284653 (+) True G536192
TU607140 lncRNA downstream 402308 66332709 ~ 66334248 (+) True G536218
XM_021607287.2 mRNA upstream 53940 65833759 ~ 65843569 (+) True LOC110526370
XM_036980723.1 mRNA upstream 104829 65774787 ~ 65792680 (+) False LOC110526368
XM_021607289.2 mRNA downstream 18018 65948419 ~ 66035381 (+) True LOC110526373
XM_021607292.2 mRNA downstream 154718 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA downstream 154718 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA downstream 154718 66085119 ~ 66098315 (+) False LOC110526374
XM_036980728.1 mRNA downstream 162281 66092682 ~ 66098315 (+) True LOC110526374
TU605959 other upstream 48068 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 736179 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 779553 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1050405 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1121173 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 672384 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 1082819 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 1173905 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 1174010 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 1174010 67104411 ~ 67104908 (+) True G537029

Expression Profile