RNA id: TU606992


Basic Information

Item Value
RNA id TU606992
length 417
lncRNA type intronic
GC content 0.46
exon number 2
gene id G536093
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66115127 ~ 66116208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgagttgttattttacctgacaTGCACAAGGTCCTCTTCTCCGCCAATTAATCTAAAATAAAATggtcaaccaaatcgtttctagtcatctctcttccttccaggctttttcctctcttgactttatattgcgattggcaactttcataaattaggtgcattaccaccactgaccttgttcgtctttcagtcacccacgtgggtataaccaatgaggagatggcacgtgggtacctgcttctataaaccaatgaggagatgggagaggcaggacttgcagcgcgatctgcgtcacaaatagaactgacttctattttagcccttggtaatgcaatccctcagtccagcctctctcagcctattgcggacagtctgagcactgatggagggattgtgtgttcctggtgtaactcggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606853 lncRNA downstream 184734 65897533 ~ 65930393 (-) True G535958
TU606840 lncRNA downstream 232047 65882854 ~ 65883080 (-) True G535946
TU606831 lncRNA downstream 242648 65872276 ~ 65872479 (-) True G535938
TU606827 lncRNA downstream 255880 65859028 ~ 65859247 (-) True G535934
TU606812 lncRNA downstream 272880 65840709 ~ 65842247 (-) True G535925
TU607016 lncRNA upstream 21488 66137696 ~ 66137933 (-) True G536108
TU607033 lncRNA upstream 42401 66158609 ~ 66158817 (-) True G536125
TU607035 lncRNA upstream 43704 66159912 ~ 66160232 (-) True G536127
TU607037 lncRNA upstream 47197 66163405 ~ 66163824 (-) True G536129
TU607044 lncRNA upstream 54631 66170839 ~ 66171044 (-) True G536136
XM_036980726.1 mRNA downstream 3321 66098317 ~ 66111806 (-) False LOC100499618
XM_036981772.1 mRNA downstream 264045 65844958 ~ 65851082 (-) True LOC110526372
XM_021608121.2 mRNA downstream 287050 65826929 ~ 65828077 (-) True LOC110526945
XM_021607274.2 mRNA downstream 294790 65798073 ~ 65820337 (-) True LOC110526367
XM_021607277.2 mRNA downstream 297723 65798073 ~ 65817404 (-) False LOC110526367
XM_021607294.2 mRNA upstream 63418 66179626 ~ 66181802 (-) True LOC110526375
XM_021607296.2 mRNA upstream 68019 66184227 ~ 66252048 (-) False LOC110526376
XM_036980730.1 mRNA upstream 70783 66186991 ~ 66236457 (-) False LOC110526376
XM_021607298.2 mRNA upstream 70783 66186991 ~ 66252047 (-) False LOC110526376
XM_021607299.2 mRNA upstream 70783 66186991 ~ 66252047 (-) False LOC110526376
TU606664 other downstream 489155 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 1229595 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1500331 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 1615513 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 2289602 63823899 ~ 63825525 (-) False igdcc3
TU607101 other upstream 146278 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 160994 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 384180 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 433159 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 2026043 68142251 ~ 68144907 (-) True G538277

Expression Profile