RNA id: TU607016


Basic Information

Item Value
RNA id TU607016
length 238
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G536108
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66137696 ~ 66137933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacttcatcactacttttatttatgagaggtattgacatgctgaatgaaccgtgctgtctgtctaaactactggcacacagctcagacacccatgcataccccacaagacatgccacaagaggtctcttcacagtccccatgtccagaacagactatgggaggcacacagtactacatagagacaagactacatggaactctattccacacacaagtaactgacgcaagcagtaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606992 lncRNA downstream 21488 66115127 ~ 66116208 (-) True G536093
TU606853 lncRNA downstream 207303 65897533 ~ 65930393 (-) True G535958
TU606840 lncRNA downstream 254616 65882854 ~ 65883080 (-) True G535946
TU606831 lncRNA downstream 265217 65872276 ~ 65872479 (-) True G535938
TU606827 lncRNA downstream 278449 65859028 ~ 65859247 (-) True G535934
TU607033 lncRNA upstream 20676 66158609 ~ 66158817 (-) True G536125
TU607035 lncRNA upstream 21979 66159912 ~ 66160232 (-) True G536127
TU607037 lncRNA upstream 25472 66163405 ~ 66163824 (-) True G536129
TU607044 lncRNA upstream 32906 66170839 ~ 66171044 (-) True G536136
TU607077 lncRNA upstream 115006 66252939 ~ 66253159 (-) True G536169
XM_036980725.1 mRNA downstream 15557 66098317 ~ 66122139 (-) False LOC100499618
XM_036980727.1 mRNA downstream 15557 66098317 ~ 66122139 (-) True LOC100499618
XM_036980726.1 mRNA downstream 25890 66098317 ~ 66111806 (-) False LOC100499618
XM_036981772.1 mRNA downstream 286614 65844958 ~ 65851082 (-) True LOC110526372
XM_021608121.2 mRNA downstream 309619 65826929 ~ 65828077 (-) True LOC110526945
XM_021607294.2 mRNA upstream 41693 66179626 ~ 66181802 (-) True LOC110526375
XM_021607296.2 mRNA upstream 46294 66184227 ~ 66252048 (-) False LOC110526376
XM_036980730.1 mRNA upstream 49058 66186991 ~ 66236457 (-) False LOC110526376
XM_021607298.2 mRNA upstream 49058 66186991 ~ 66252047 (-) False LOC110526376
XM_021607299.2 mRNA upstream 49058 66186991 ~ 66252047 (-) False LOC110526376
TU606664 other downstream 511724 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 1252164 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1522900 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 1638082 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 2312171 63823899 ~ 63825525 (-) False igdcc3
TU607101 other upstream 124553 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 139269 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 362455 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 411434 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 2004318 68142251 ~ 68144907 (-) True G538277

Expression Profile