RNA id: TU607037


Basic Information

Item Value
RNA id TU607037
length 420
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G536129
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66163405 ~ 66163824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaatgttcagtctctcaaatgaaatcaaatcaaattgtatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtgaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtatcgagtacagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatatatgtaTTACAtgaggatacagtcgatgatatagagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607035 lncRNA downstream 3173 66159912 ~ 66160232 (-) True G536127
TU607033 lncRNA downstream 4588 66158609 ~ 66158817 (-) True G536125
TU607016 lncRNA downstream 25472 66137696 ~ 66137933 (-) True G536108
TU606992 lncRNA downstream 47197 66115127 ~ 66116208 (-) True G536093
TU606853 lncRNA downstream 233012 65897533 ~ 65930393 (-) True G535958
TU607044 lncRNA upstream 7015 66170839 ~ 66171044 (-) True G536136
TU607077 lncRNA upstream 89115 66252939 ~ 66253159 (-) True G536169
TU607205 lncRNA upstream 113378 66277202 ~ 66281619 (-) True LOC110526379
TU607240 lncRNA upstream 163360 66327184 ~ 66327408 (-) True G536288
TU607242 lncRNA upstream 164778 66328602 ~ 66329309 (-) True G536290
XM_036980725.1 mRNA downstream 41266 66098317 ~ 66122139 (-) False LOC100499618
XM_036980727.1 mRNA downstream 41266 66098317 ~ 66122139 (-) True LOC100499618
XM_036980726.1 mRNA downstream 51599 66098317 ~ 66111806 (-) False LOC100499618
XM_036981772.1 mRNA downstream 312323 65844958 ~ 65851082 (-) True LOC110526372
XM_021608121.2 mRNA downstream 335328 65826929 ~ 65828077 (-) True LOC110526945
XM_021607294.2 mRNA upstream 15802 66179626 ~ 66181802 (-) True LOC110526375
XM_021607296.2 mRNA upstream 20403 66184227 ~ 66252048 (-) False LOC110526376
XM_036980730.1 mRNA upstream 23167 66186991 ~ 66236457 (-) False LOC110526376
XM_021607298.2 mRNA upstream 23167 66186991 ~ 66252047 (-) False LOC110526376
XM_021607299.2 mRNA upstream 23167 66186991 ~ 66252047 (-) False LOC110526376
TU606664 other downstream 537433 65623989 ~ 65625972 (-) True LOC110526365
TU605344 other downstream 1277873 64855495 ~ 64885532 (-) True G534603
TU605061 other downstream 1548609 64578798 ~ 64614796 (-) True G534349
TU604906 other downstream 1663791 64498453 ~ 64499614 (-) True G534201
TU604146 other downstream 2337880 63823899 ~ 63825525 (-) False igdcc3
TU607101 other upstream 98662 66262486 ~ 66276289 (-) True G536183
TU607202 other upstream 113378 66277202 ~ 66281619 (-) False LOC110526379
TU607649 other upstream 336564 66500388 ~ 66505025 (-) True LOC110526387
TU607613 other upstream 385543 66549367 ~ 66549974 (-) True G536630
TU609527 other upstream 1978427 68142251 ~ 68144907 (-) True G538277

Expression Profile