RNA id: TU607084


Basic Information

Item Value
RNA id TU607084
length 3402
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G536174
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66256684 ~ 66261444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctttcatcacattcccagtgggtcagaagttaacatacactcaaattagtatttggtagtatttgactttaaattgtttaacttgggtcaaacatttcaggtagccttccacaagtttcccacaataagttgggtgaattttggcccattcctcctgacagagctggagtaactgagtaaggtttgtaggcctccttgctcgcatacactttttcagttctgcccacaaattttctataggattgaggtgagggctttgtgatggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagacccatttgcgaccaagctttaacttccttcacggttgggatggtgttcttcgggttgcaagcctccccctttttcctccaaacataacaatggtcattatggccaaacagttctattagtgtttcatcagaccagtgcacaattctccaaaaagtacaatctttgtccccatgtgcagttgcaaaccgtagtctggcggttttatggcggttttGAATGATGGGTCTCTAAACGTGATATGCATTGCTGCCTATCTGCTAATCTCTTGACCGGATTTAATTACAGAAAATCTCAAAACTCTTACCAAACATAAATCAATATCTTCCATCTATTGTTGAAATATGTGTGAAGAATCATGGAAAGGAAAAAACTGATTGCACACAGAGGAAATGGCGTAAGCAATCTTCAGCAAGAAATGTAACAAACCAGCCATACAAAAGGAGTACAAGGTAAAGCCTTTACACCCATATGCTACATAGAAAATAGGAGCTTTCAAGTAACTTCAATGAAGGACCAATTCACTCTTTCAGATCAGAATCCGTGGTGCCAATCAATAGATGCCAACATAAAGTGCCAACCCTGTAATAACTATGAACCACTTATCAGTAGTATTACTCACTTCTTACCTCACCTTTTGTGTGTGCGTCTGTTTTCTCAGCATAAGAGCAGCTCTTACACTACAGAGGCAAGAGAGTATCATGTCTGTTAGTCATGCGTAGAGGCTTATTTGATATaatgaatggagggagggatgtagaagATGCGATGGGAGGGTAATTACTTTAATGGCTGCAAAGGCTCCTGTTCAAAACACCTTTGCGCACAATGGTTGATTATGGATGGTCATTTCAGCTTTCTGATGAAAACGCAGAGCTCTTAGTCTCTGGGCTTGACTGATAATAGCATGACCAGAAATGTGTCAGAACAATGAAGTACCGAAATACATTGTCACATTCTCCCCTAAAGGTCTAAGCCTTCAGTTCTGAACTTCAATTCATGGAAATAGTGGCATTTGTTAAACGCACCACAAAAAGCaagatgaagacagagagtcagagtttatacagtatgatgtatggAAAGATAGCAACTCAGTTCACAAGAGATATGACCAAgagtaaaaacagaaatatcaagAAAACAAAGAACTGAGCTATGAGTATTTTCTACTTTAGGTAACTCACTCATTTCTCCTCTCACTCATTTCTGTGCTGAATTAAATTAGTTGACATGACACACTAAAAGCATCTTAACTAATCTTAAGTGTCTGTAAATTGAAATAAGTGAATTTCAACTTCTAAAAAGAAGCAATTAAATAAAAGAAACATGCTACATAGATCAAATCAGGCACAAAGAAATTCCACTGAAACTTCTATTGTACCCTTGTCATGCATTATGTGCTGTGCTCAGTAGTGTTGTTACTCAAAGGAAAAATGTGACCTTCCTATTCGCAGCGAAGCACTTAGCAAAGCCACTCCGTCAGTGTGTGGTTAGCAAATCCATTCATGAATTGCATGTAGAGCACCGCTACTTCTTGGGAATTCTGTAAGCTAAGTTCTTGTTGTAAAGCAGCCACTTCCCCCAACACCCACAGTCCCATACAGTATTATTTGTCTATGAAACGGTACAATGTCAGGTGTAATGAAAGTTGGGTATAGTTATGTTAAAACCACCAAATCCTGATGGtatttaaaacatgtatttaaaaaaGCAAGTCAGtaatgaacaaattcttatttacaatgacggactacaccggccaaacctggacgacgctgggccaattgtgcaatgccctattggactcccaatcacagccggttgtgatacagcttggatttgaaccagggtgtctgtagtgacacctctagcactgagatgcagtgccttagacccctgtgCCACATTTTCTTGGGCTCTTCTATATTTCACTTGATGATATGGCACGGTAACAATACAGAGCATACAAGTTTCCATGGGAAGGAATGCCACAAGTTTGCTACAGCACAAGGCCCATAATCAAAACTGCACTCAGACCACAACATAGAAAGAAATGATCACGACATTCAAATTAAAGTACACAACGGAATCAATTTTGGTCAAATTCCCACACTACATTCTCAGCACTACTAGCTAGTtctgttgaatatagtgtatgTTTTATCTTTTGAATTCATGCTCCACTCTTGAAACTGGCACTTGCTGTTCTGTAGTTTTAGTAAACACTGCTTTGGAACATTACTTTACAAACCTTTTTTATGAATAGATTATGAACAAATAGTCAAAATTAGCCATACATCATGCTTTGGATAAGTACACATTTTTTTTAAGACTAACAGCTTCATATAATTGATCTAAAAGACTTTCTTTGGTAAATGATGAGCCAAAATGTCACTAAAAGGTAGACTATTTTTAAAGCACAACGACCAGTattaaaatatataaaattaGACATAAAGCAAACAAAGGTAAAAGATATGCAGTGTGGCAGTATATAAATTAATAGTGCATACTGTGTGGTCCCATTGCTTTATAAGCACAAAAATCAAAAACCCTTTGAGCCAATTCAAAACTTCTGATTTCTTTCAAAAGATGGAAGTAAATACTTTGATAAGCACAAACTCAGCTGTCATACATTCAATACATCTATATTCTGATCCTTCATGTAGTCGCAAGTGAATCCAAGTAGACTTCAAACGGTTTCGGCCCGGAATGACATGGGCAAGAACAATTCAACATGGCAATGACTCAACAATACGACGGCATAATCAATAATTCATTAAGTTAACCTTCAATAATACTGAAATATATCTGTCTTTTCATATCCAAGTACTTTACAACATATTGTGCTGTACTTGTGTTTTAGTGAGCCTTCAGCAGGACAAAGCTAACACAGGTGTGCTCTCCCTATTAGATGCATCGTGTTTGCCCTGAAATATACATCTAAACAGGGCATTTGCTTGATAGATACGTCGATATAACTGAATGAACGGTGAAGCACTCGTCTTTATTCCACATGTCTGTATTTGGTGAAGAGGTTGTAGAGTACCCTCAGAGTAGACTTCAGGTCACAGTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU606182 lncRNA upstream 109829 66146585 ~ 66146855 (+) True G535358
TU606006 lncRNA upstream 326283 65897509 ~ 65930401 (+) True G535194
TU605993 lncRNA upstream 373672 65882726 ~ 65883012 (+) True G535182
TU605988 lncRNA upstream 379440 65876943 ~ 65877244 (+) True G535177
TU605987 lncRNA upstream 379763 65876668 ~ 65876921 (+) True G535176
TU607106 lncRNA downstream 15107 66276551 ~ 66276752 (+) True G536188
TU607111 lncRNA downstream 21633 66283077 ~ 66284653 (+) True G536192
TU607140 lncRNA downstream 71265 66332709 ~ 66334248 (+) True G536218
TU607142 lncRNA downstream 78669 66340113 ~ 66340522 (+) True G536220
TU607287 lncRNA downstream 152972 66414416 ~ 66437171 (+) True G536329
XM_021607292.2 mRNA upstream 158369 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA upstream 158369 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA upstream 158369 66085119 ~ 66098315 (+) False LOC110526374
XM_036980728.1 mRNA upstream 158369 66092682 ~ 66098315 (+) True LOC110526374
XM_021607289.2 mRNA upstream 221303 65948419 ~ 66035381 (+) True LOC110526373
XM_021607323.2 mRNA downstream 66287 66327731 ~ 66332554 (+) False dkk3a
XM_021607322.2 mRNA downstream 66293 66327737 ~ 66332554 (+) True dkk3a
XM_021607328.2 mRNA downstream 199279 66460723 ~ 66500000 (+) False pkd1l2a
XM_021607330.2 mRNA downstream 204315 66465759 ~ 66500000 (+) False pkd1l2a
XM_021607331.2 mRNA downstream 209365 66470809 ~ 66500000 (+) True pkd1l2a
TU605959 other upstream 407243 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1095354 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1138728 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1409580 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1480348 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 341341 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 751776 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 842862 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 842967 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 842967 67104411 ~ 67104908 (+) True G537029

Expression Profile