RNA id: TU607140


Basic Information

Item Value
RNA id TU607140
length 1510
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G536218
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66332709 ~ 66334248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTAACTATGTTCACACAAGATTTAAACCTCAAAACAAAGAAACAAATTATTTTATTGGCATTTCTACTGTGAACAGCTTGTGGCAGGCAGCATTAGAAGCCCAGAGGAGCTCTGCTGGGCCCTGCAGTGTGGAGACCCAGTCAGCTGGTCCAGTAGGGTCTATGCCCTCTGGTCTCAGTCTATGAGAAGCAGCAGCAGGTATATATTGCCCCCAACCATCTCCCAAAACCACTGAGGGCTCCCGCCCCTCAAGCAATCAGCATTCACATCGTGCAGAAATAAAAACGACAGAGGAAATAAACATGTTTCTAAATTAACATAAGGTTAAATACAGACAAAATGTTTTTAATGTGTGCCAGAGGTCGCTCACAATAACATCAAAATAATTTACATTGAACAAAATGATGAGCGCCTAAAATTAGTCTACTTGGTGGTCTAGTTGCCATTTCCTTGGTAATTGGAAGACTAACACATATCAGTGAATCAGGAGGAAATGGCAGAGGCTGAGTTCCTATAAAGCAAAGGGGGTGGAGCAGCAGTAAGAGGAGTTTCCACAGGGATGCACACTGTGGCATTCTGGGAAAACAGCATAAATGTCagcaaatttaaaaaatgaccgCTTTATAGAATCAGAGATACAGAGGTCATTCAAATGTTGAGTGTGAACTACATATCAATTTGCCAAAGATGATAAACTGCAGTTTGGATTAAAGAAGATAAAGAACCTGGAAGAAAACTGAAAGTGAGTTTGTTGTTGTAGATACTCTTGGCTTTATACTCACAGTCTCTAAAGTGGGTGGGTGGGACGAGCATCGCTCTAGCCTGGTAAAATTTCAAATGTGGAGAATTTGAACCAGGTACATGTTCACAGATGGGTCAGGTAGTCTCTTGCTAGTCTGCAtaacagagggggagagcgagaaacCAAGTGctagagggagatgaggagaaaaAGTGTCGCAGAGAAGAGAGGAAACAGAAAGACATTTCTTTCCCCCTGGCTACACAGCTCTACCCTGATCGTGCACCCATGTCTGGAACATTTCCATTAAATTGATTTGTCGGTatggtatttttttttatttaattgaatAGCTTTTGCACTTCCCTTTAAACTTCACAGTACAATAAACTACAGTGCACAATATGATTTCTGAGCCACTCTTTCCCCTAGAGCTCAGATGGGAGGACGAAAGAGGGCGTGTGAAACGCACTGCTCTGGTGACGTCGTCGAGTCAACGTGGGGCCCCACGCCAGACAGGGTCCCCTGGCCGGGCCAAGCTACActgcggcaggcaggcaggccagccaGCTAACTGGGACGGGCCTCAGATGGGCCTCAGTCCTGCCCCGGGTCCTTGACCGGGCCCCCATCCAGGTAGATCTTAAGGGCCTTCTCCTTACGAGGTGAGTAACTGACCCGTTGGCCAGTCTTCAGCAGCCGGCTGCTCTCCTTCTTCATCAGCTCATTGCGTTCATCTTCCGACTGTTCCATAGGCTCCTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607111 lncRNA upstream 48056 66283077 ~ 66284653 (+) True G536192
TU607106 lncRNA upstream 55957 66276551 ~ 66276752 (+) True G536188
TU607084 lncRNA upstream 71265 66256684 ~ 66261444 (+) True G536174
TU606182 lncRNA upstream 185854 66146585 ~ 66146855 (+) True G535358
TU606006 lncRNA upstream 402308 65897509 ~ 65930401 (+) True G535194
TU607142 lncRNA downstream 5865 66340113 ~ 66340522 (+) True G536220
TU607287 lncRNA downstream 80168 66414416 ~ 66437171 (+) True G536329
TU607306 lncRNA downstream 112757 66447005 ~ 66449264 (+) True G536348
TU607333 lncRNA downstream 154317 66488565 ~ 66492463 (+) True G536371
TU607356 lncRNA downstream 237811 66572059 ~ 66572392 (+) True G536392
XM_021607323.2 mRNA upstream 155 66327731 ~ 66332554 (+) False dkk3a
XM_021607322.2 mRNA upstream 155 66327737 ~ 66332554 (+) True dkk3a
XM_021607292.2 mRNA upstream 234394 66085119 ~ 66098315 (+) False LOC110526374
XM_021607293.2 mRNA upstream 234394 66085119 ~ 66098315 (+) False LOC110526374
XM_036980729.1 mRNA upstream 234394 66085119 ~ 66098315 (+) False LOC110526374
XM_021607328.2 mRNA downstream 126475 66460723 ~ 66500000 (+) False pkd1l2a
XM_021607330.2 mRNA downstream 131511 66465759 ~ 66500000 (+) False pkd1l2a
XM_021607331.2 mRNA downstream 136561 66470809 ~ 66500000 (+) True pkd1l2a
XM_036980742.1 mRNA downstream 172663 66506911 ~ 66565353 (+) False LOC110526388
XM_036980743.1 mRNA downstream 172663 66506911 ~ 66565353 (+) False LOC110526388
TU605959 other upstream 483268 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1171379 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1214753 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1485605 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1556373 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 268537 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 678972 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 770058 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 770163 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 770163 67104411 ~ 67104908 (+) True G537029

Expression Profile