RNA id: TU607287


Basic Information

Item Value
RNA id TU607287
length 2050
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G536329
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66414416 ~ 66437171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAAAAAGgaaagccagtttggatttggcttcacaccaatcacatcaagcCAGActtcattgagagagagaaaatatttaATTCTTGCCTCtccttgtgttgttgtcctccagtgtctggctagctaaaattgtcccttttctaaattagccatggacAGAGATTtgaacttgtggttttacttaattctccgtactggccaatgattataaaggcgattctgatccaaccaaaAATTCATACGTTGTGTCTCTGGCCTGAGAGGAtagaagttcaatatgtagctagatgtagtaggctaatgtttaCTAGCTGGCTAATCATTGGCCATGAAATGCTTGCAAGCAAGCACTTTAGCCAGGTAGCttatgacaacaaaaactaaaagcttATACTGTATGACAGTCATTGATGTTTCGGGAAATGAAAGAGGATGGCACTGGCGTtcctctacaagtagggtgaagCAACATGTTTTTCTACACACACACGAGGGAAAGAAAGAAGTACCATGGACAGTCACATGATATTTAAGCGTACATTGATTGGACTACATTGTTTTTGgaatattttagttgtcactgtattagactaagcataggtgagtTGATGATGTTGCCattttgaagttgaaatggtgctggaatagtggaagcagctcctgttttctttgggaCTTGAGGTAACTCTCAggtgttctaaatcaatagttgttcagTTGTCTGAAAATCTCAGAAACATTGATTtaattgaccatgctgtaggtcatgtaactgttagttacatgcaatatgctttgtggactccacCAGACAGATGTTttctctggttttgtgatgaaacaaagttatggttgaatttattctgccactgcctcttcttattgtctcgggcGTAGGCCAATATCACGATGGCAAGGCATATGAACAGGATAAGAGAAAACAAAGCAATTATCACAACCCCTAAATTGTAATAGGCAATTTTTTCCTGGCTTGGCTTCTCTAgggattttacccacgcactgctACTGCCCTAGTTATACCTGTGAATGTTACTGCGCATGTTATGTTGATAATGAAAATGATCTAAAGTTTCCATAACCATCTCACCAGGTTACATACCTTTGAGGTCCGCCTTCACTGGATCAGGTCTTTCTTCTATGTTTTTAGCGTAGTCGTAGGCCATCCTCTGGTCGAAAGACTATCCACACAGGTGGTGGCGGTCCGAACTCCGGCTGTGGAGATCACAGATGAGAACAGAGATATCCACGTGGGAGACTGGGTAAGAGTCAAGGTGCACTCCAGGAAGTGGACAGAGCCCAGATGGGAAGGACCCTATCAAGTAAAAGAGGTATCTAGTCACTCGTTGAGAGTGAACACAAAGCGAAACCCCGTGGTATCACCGTACTCATTGTGCTAAAGACTCAGCCCCGAGTAGGACCCTAGACCAGGTCGTATCAGACGTGGCAGAACCCTAGGAAAATGTACCTTACGTACATTTTATGCTACTAATTGTAGGAACAGAGGGATCTACTGTAGTGAATGGTAGCATTTACAAGGCTCTTGAAGGACTAGACAAGCTATCTGCAGAAATAAAAGAACATGGCAGGAGTGGAGAGGACTGGACTGTTCTCCTGGTTGGGTGAGTGGTTCGATAGGTACACAACATTGGTGGTTGCTGGATTTCTGACCCTGGTTGCGGTATTGGTTGCATTAATGTGCTGCGGTGCCTGCATTACACCTTGTCTGAGAAAATCTATTACAGACGTGGTTCATGCCGCTGGGATGATGCCCCTGCTCAAGGTGAAGGATAATGAGGCAGACACCGAGATGGGGCTGATGGAAGACGATCCCTGGTTTGCTACAGGGGAGGTTAATGAGTGACACCATAGGGGGTGTCAAAGGGGGACTCAAAAATAGTTATTTCTTATTCTATAAACGTTTTACTTTTGTTAATGCTATTAAATAACGAGTTTTTGTTCTCAATTTCAAAGAGGGTTTTAAGTTCCTAGGTGGCTGGTAGCCAACCTAGTACACAGTGGGATCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607142 lncRNA upstream 73894 66340113 ~ 66340522 (+) True G536220
TU607140 lncRNA upstream 80168 66332709 ~ 66334248 (+) True G536218
TU607111 lncRNA upstream 129763 66283077 ~ 66284653 (+) True G536192
TU607106 lncRNA upstream 137664 66276551 ~ 66276752 (+) True G536188
TU607084 lncRNA upstream 152972 66256684 ~ 66261444 (+) True G536174
TU607306 lncRNA downstream 9834 66447005 ~ 66449264 (+) True G536348
TU607333 lncRNA downstream 51394 66488565 ~ 66492463 (+) True G536371
TU607356 lncRNA downstream 134888 66572059 ~ 66572392 (+) True G536392
TU607357 lncRNA downstream 136070 66573241 ~ 66573496 (+) True G536393
TU607358 lncRNA downstream 136385 66573556 ~ 66573851 (+) True G536394
XM_021607323.2 mRNA upstream 81862 66327731 ~ 66332554 (+) False dkk3a
XM_021607322.2 mRNA upstream 81862 66327737 ~ 66332554 (+) True dkk3a
XM_021607293.2 mRNA upstream 316101 66085119 ~ 66098315 (+) False LOC110526374
XM_021607328.2 mRNA downstream 23552 66460723 ~ 66500000 (+) False pkd1l2a
XM_021607330.2 mRNA downstream 28588 66465759 ~ 66500000 (+) False pkd1l2a
XM_021607331.2 mRNA downstream 33638 66470809 ~ 66500000 (+) True pkd1l2a
XM_036980742.1 mRNA downstream 69740 66506911 ~ 66565353 (+) False LOC110526388
XM_036980743.1 mRNA downstream 69740 66506911 ~ 66565353 (+) False LOC110526388
TU605959 other upstream 564975 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1253086 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1296460 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1567312 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1638080 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 165614 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 576049 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 667135 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 667240 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 667240 67104411 ~ 67104908 (+) True G537029

Expression Profile