RNA id: TU607358


Basic Information

Item Value
RNA id TU607358
length 296
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G536394
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66573556 ~ 66573851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acataacatATTTGATTTGGtcaaataagtattcagaccctttttctatgagactcaaaattgagctcaggtgcatcctgtttccattgatcatccttgagatgtttcttggacattgaccaagttattattattgtagctgtctaccacagcatattggagtTGAAATTAAATAAGGAGCTGAAAGTGTAGAAGttcatttgagggtatttacATCCAAATCGGGTGACCGGTGTAGGAATTATAGCACTTTTTATATGTGCCCCCCTTTTTTAAGGGACTAAAAGTAATTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607357 lncRNA upstream 60 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 1164 66572059 ~ 66572392 (+) True G536392
TU607333 lncRNA upstream 81093 66488565 ~ 66492463 (+) True G536371
TU607306 lncRNA upstream 124292 66447005 ~ 66449264 (+) True G536348
TU607287 lncRNA upstream 136385 66414416 ~ 66437171 (+) True G536329
TU607364 lncRNA downstream 9507 66583358 ~ 66587117 (+) True G536400
TU607373 lncRNA downstream 74706 66648557 ~ 66651510 (+) True G536409
TU607563 lncRNA downstream 354714 66928565 ~ 66932555 (+) True G536585
TU608018 lncRNA downstream 438320 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 462778 67036629 ~ 67036990 (+) True G537000
XM_036980746.1 mRNA upstream 8203 66538687 ~ 66565353 (+) False LOC110526388
XM_021607336.2 mRNA downstream 1639 66575490 ~ 66591573 (+) False LOC110526389
XM_036980750.1 mRNA downstream 1674 66575525 ~ 66591573 (+) True LOC110526389
XM_021607338.2 mRNA downstream 18730 66592581 ~ 66596719 (+) False LOC110526391
XM_036980752.1 mRNA downstream 19488 66593339 ~ 66596719 (+) True LOC110526391
XM_036980751.1 mRNA downstream 23927 66597778 ~ 66602137 (+) True LOC110526390
TU605959 other upstream 724115 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1412226 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1455600 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1726452 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1797220 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 28934 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 439369 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 530455 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 530560 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 530560 67104411 ~ 67104908 (+) True G537029

Expression Profile