RNA id: TU607364



Basic Information


Item Value
RNA id TU607364
length 518
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G536400
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66583358 ~ 66587117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggctgaatacttttgcaaggcactgtagctgtatTCAGACAGCAAAACATTTCTCACTATCACAGTTATATACAATCCCACTTTAGGACACATGTCCTTCtttctccaatccttacatcttatggttcAACAGGAAGAAGGTAACCAGATACTAAACCCTGATTACTCCCTTAAGGGGAACTgacctcacctcctgacctcaacccctccttccccTAGTCCATAGATGTCCGTCTGTCTCCCCTATCTCAACCGTTGCTCTACTCCTTTCCACCAACACATTCCAAAGCTATCCGTCTTCCCACagagaaccattaacttctgacaCACAACCCAGTCTCTTTCACTCTTCCTATTCAAGGCTTCTTCTCTATCCTTTATTTag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU607358 lncRNA upstream 9507 66573556 ~ 66573851 (+) True G536394
TU607357 lncRNA upstream 9862 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 10966 66572059 ~ 66572392 (+) True G536392
TU607333 lncRNA upstream 90895 66488565 ~ 66492463 (+) True G536371
TU607306 lncRNA upstream 134094 66447005 ~ 66449264 (+) True G536348
TU607373 lncRNA downstream 61440 66648557 ~ 66651510 (+) True G536409
TU607563 lncRNA downstream 341448 66928565 ~ 66932555 (+) True G536585
TU608018 lncRNA downstream 425054 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 449512 67036629 ~ 67036990 (+) True G537000
TU608030 lncRNA downstream 453243 67040360 ~ 67040589 (+) True G537004
XM_036980746.1 mRNA upstream 18005 66538687 ~ 66565353 (+) False LOC110526388
XM_021607338.2 mRNA downstream 5464 66592581 ~ 66596719 (+) False LOC110526391
XM_036980752.1 mRNA downstream 6222 66593339 ~ 66596719 (+) True LOC110526391
XM_036980751.1 mRNA downstream 10661 66597778 ~ 66602137 (+) True LOC110526390
XR_005052448.1 mRNA downstream 13102 66600219 ~ 66600295 (+) True LOC118965117
XR_005052446.1 mRNA downstream 13820 66600937 ~ 66601020 (+) True LOC118965114
TU605959 other upstream 733917 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1422028 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1465402 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1736254 64790322 ~ 64847104 (+) True G534453
TU605157 other upstream 1807022 64769147 ~ 64776336 (+) False LOC110526344
TU607370 other downstream 15668 66602785 ~ 66604053 (+) True G536406
TU608020 other downstream 426103 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 517189 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 517294 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 517294 67104411 ~ 67104908 (+) True G537029

Expression Profile