RNA id: TCONS_00032808


Basic Information

Item Value
RNA id TCONS_00032808
length 231
RNA type processed_transcript
GC content 0.52
exon number 2
gene id XLOC_016721
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 41577507 ~ 41723487 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aGTGCAGCAGCTGCCCCCAGCCCTGTAATGGGCAACATGCCCCCCAACGACGGCATGCCAGGCGGACCCATGCCCCCTGGTTTCTTTCAGtTGAGTTTACTCTCAGTGATCAGTCTGTTATGAACGGACGGCCTGTGAAAACAGATCAGTGATGACTCTACGGCAACTTTATGAAGACGTTTTGCTTGTTCTGAGTGGTGTTCGCCCTTGGAAACATTGATGCTATTATGC

Function

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-195 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP3 (single stranded DNA binding protein 3) and SSBP4 (single stranded DNA binding protein 4).

Ensembl:

ensembl_id ENSDART00000137476

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033393 lncRNA downstream 104881 41504477 ~ 41512326 (-) False XLOC_016718
TCONS_00033912 lncRNA downstream 169316 41441577 ~ 41447891 (-) True XLOC_016714
TCONS_00033390 lncRNA downstream 169370 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00032798 lncRNA downstream 169370 41162103 ~ 41447837 (-) False XLOC_016714
TCONS_00033391 lncRNA downstream 169370 41162258 ~ 41447837 (-) False XLOC_016714
TCONS_00033394 lncRNA upstream 131728 41751840 ~ 41772041 (-) False XLOC_016722
TCONS_00033913 lncRNA upstream 131839 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00032813 lncRNA upstream 352425 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00032815 lncRNA upstream 407345 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00033914 lncRNA upstream 407345 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032803 mRNA downstream 45753 41563073 ~ 41571454 (-) True XLOC_016720
TCONS_00032802 mRNA downstream 54339 41546271 ~ 41562868 (-) True XLOC_016719
TCONS_00032801 mRNA downstream 98867 41504752 ~ 41518340 (-) True XLOC_016718
TCONS_00032797 mRNA downstream 493194 41123277 ~ 41124013 (-) True XLOC_016713
TCONS_00032796 mRNA downstream 493410 40901997 ~ 41123797 (-) False XLOC_016713
TCONS_00032809 mRNA upstream 214913 41835025 ~ 41861040 (-) True XLOC_016723
TCONS_00032810 mRNA upstream 316491 41936603 ~ 41942666 (-) True XLOC_016724
TCONS_00032812 mRNA upstream 329074 41949186 ~ 41964402 (-) True XLOC_016726
TCONS_00032814 mRNA upstream 400803 42020915 ~ 42035250 (-) False XLOC_016728
TCONS_00032817 mRNA upstream 410426 42030538 ~ 42035307 (-) True XLOC_016728
TCONS_00032800 other downstream 195485 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032799 other downstream 405113 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032788 other downstream 1021713 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032787 other downstream 1072146 40544946 ~ 40545061 (-) True XLOC_016707
TCONS_00032779 other downstream 1547355 40067808 ~ 40069852 (-) False XLOC_016701
TCONS_00032811 other upstream 325863 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032833 other upstream 751897 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032837 other upstream 783949 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 1052738 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032856 other upstream 1342116 42962228 ~ 42962344 (-) True XLOC_016753

Expression Profile

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