RNA id: TU607373


Basic Information

Item Value
RNA id TU607373
length 2894
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G536409
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66648557 ~ 66651510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccttgaatgagtaggtgtgtccaaatttgacGGGTACTGTACAAGCCAACTTGACATTTTGTAACATGACTCACACTAATATTACGTTACAGTACAACGTTTTAAAGCTTAGTGATTTATTACAGATTAAGCAATGTGACTTACACACATGTTATGTCAATCTCAGGTTTATAGTGACCTTATGCAGGCATGATGGCAGAGCATTCAAATGAAATTTTACAGAAGTGTATACATGATAAAGAAGTCAACACGTACAAacaaatatatgtacagtgtaaATGAATGATAAAGTTCGACATCAAGATAAATCAGATCTTTATCAACTGTTATGCCCATTACCTCCATATGAAGCATACCTTAGGGATTTATCTTTTTCTCAACCTGACCTATCTGGAGCCTTAGCCAGTTACTTTTCTTAATTGAATTAACGAGGAACATTTTAAATGGGGCTCTTCGTGGTGTTTGTGTCACAAGGCTGTGAACGATATTGTAGGTCTTTCAAAAACGAAATCTTATTCCAATGCGAAAACCCTGCCATCGCTCATGTGAAAGACCTCACTGCACTGTCTAGTAAATAATCTAAATACGGTGGAATTGATATGATTTCTATTGTTTGACGAGTGCAAATGTCACAGGAGTACACTGACATTAATAAGAAACCAGAGAGTGGGATCATGGCCTTGTATTCAcattgacttgtttggatgagATGCGGCTGACTTATGGTAAGCAGCTTTACATGCACATCCCTCCATGATTAATATGTCCCGTAACCATTATTTGTTCTCTCTGTTGACACTTTGACTTGTTGATTGTATAAATCATGGGTAAGAAGTCTTGCACGTAGTTCCATAAACTTCTTCTGCTAAAAATTCTACTGACGTAGTTTAGGTGCATCAGGTATCTACTTCAGATATGATGCAAACAGAGGTAACCTGAATCACTGAAATCGTATTATTTTGTCTGCCCATAttttttacatacactaagaatAACACCTAAAAACAGGTTGCATTCAGTATAAAGATTGCAAATGTTTGCTCATAATGGAGAAATACGAGGAAGATTACATCACAGTTGTCTGGGATATTGTAAAACTGGCTCTAATCCTTATCAATACCTTTCTCTGGACAGTGACAACCACATGTAGGCTGGAATTCAGTTGAACCCGCCATAGATGGTCAATTAGCATAATATGGGTTTTTAGATTTTGATGCCAGTCCGTGCCATTGCCTCTGTCTCCTTTGTTGATGCGACTTTGTAATTATCAAGTTCACTTTGGCTTCTCCCTCAATGCTTGCATCTCTCCCAGGTGGCCCATGTGCTCTTATGTACATAACTGTGGCTAAACTCCCCCGGTACAGTGCTCCTGTGTGCTGTGGTCTGAGCTCCTTTGAAGAACAGTGAGTGTGTATCTGTCACTAAGGACCACAAGCTTCGGCCTATTGATTCAGGACTCCCAGATCTGGAATCCTCCTTGATCAGCTGAATGTAAATAACCCTGGATGGACTTTCATCTCCACACTGGGGCTCTGCAGTGGGACGTGTAGGATGGGGAAATGGATGTAGAACATTTGCCAATGTTCTGTTGGACTGAGTTCTGACATCAATGGTAATATATTGAAGTACTTTATATTTATTAAATTAatgatttgtttgtttttgtttggatATCTACTATGTGTTTGTTTGAATATGATGACACCATTTCTCAAGATGGCATAATGCCATGGATTTATTCATCACATGAATGGATATCTCATTTTTAGGATTACTGTTGTGCAATGGCAGGAAACCTTATCTATCAGATCTATATTGAGAAATGTATGAATCATTGGCAAGATGATGGGGTACACTGTTATCTGTTACAGCCCCTTGGTCCATATCTTTATTGCACAAGCTAAAACAGTGTGCATTTTCATAAAATTGGCTTGTGTGCAGCCCAACATATGCTCACACTAAGACCATACATACATTACACACTCCGAGCAACAGCAAGTGATATCATGCTGATATGAATCAGTATTCCTGTTCCTGAGGGGGAACGGGATTTGAATACCATATGCTCAAGTCACGCACCTTCCTGTTGTTTCtttgctgtgctgtactgttgtTCCCACCCTGGACAACATGGCCCTGGACAACATGGCCCTGGACAACATGGCCCTGGACAACATGGCCCTGGACAACATGGCCCTGGACAACATGGCCGTGGACACCATGGTTCATGATTTAATGTTGCCCTCAGGCACAAAGCACTCTCCATCAACTCAAATCATCCTTTGCTTAGTTCATTTTCAGAATAAACCCTTTAGACCAAATGCACAGTCAGTTGCAGGTATTGCTAACCCTGATGCATACTGTATCTAGCGGTATTGATTTCAATGGTGGATGTCTCCTTTAAAATATTTATGCAGGGAGAATGACTGGTTTTAAATGAGCACTGCAAAGAGTGCATAATCTGAGGTATTTATTTTGCATTCACCACTGACAAACATGGGCTTTAAACACTACTGTACTATGGGTGGAAGGTAATGCAGGCTAGTCTATTGCCCTGCTGTGTATTCCCTAAACCACTGGATGATTTTGAGGTCATAGATATATTTTATTTCTAAAAAGAGAATTCATTGCATGCTTACTTCTGTTGTTAAGATGTGTTGTACATTCCTTTGGAGTACGTTATGCTGATAGGCAAGCCTGCATTTGCACAAACCTCTGCTCATGTTGTGGATGCTCTCTTTATCTTGCATTTAGGCCAATAAATCCAGTCAACTGCATGATAGTGTCTGTGATGTCTCATCCTTGTGAAAAAAAAGTGGAAATATTCGCCCCTATTCTTCTTCCATGTTTTTGAAAAAAACTAAATAAAGCTTTAGTATTTATTGCCATTTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607364 lncRNA upstream 61440 66583358 ~ 66587117 (+) True G536400
TU607358 lncRNA upstream 74706 66573556 ~ 66573851 (+) True G536394
TU607357 lncRNA upstream 75061 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 76165 66572059 ~ 66572392 (+) True G536392
TU607333 lncRNA upstream 156094 66488565 ~ 66492463 (+) True G536371
TU607563 lncRNA downstream 277055 66928565 ~ 66932555 (+) True G536585
TU608018 lncRNA downstream 360661 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 385119 67036629 ~ 67036990 (+) True G537000
TU608030 lncRNA downstream 388850 67040360 ~ 67040589 (+) True G537004
TU608033 lncRNA downstream 396779 67048289 ~ 67048510 (+) True G537007
XM_021607339.2 mRNA upstream 1134 66609230 ~ 66647423 (+) False LOC110526392
XM_021607340.2 mRNA upstream 1134 66609275 ~ 66647423 (+) True LOC110526392
XM_036980751.1 mRNA upstream 46420 66597778 ~ 66602137 (+) True LOC110526390
XR_005052447.1 mRNA upstream 46788 66601685 ~ 66601769 (+) True LOC118965116
XR_005052446.1 mRNA upstream 47537 66600937 ~ 66601020 (+) True LOC118965114
LOC110526947 mRNA downstream 68298 66719808 ~ 66720441 (+) True LOC110526947
XM_021607342.2 mRNA downstream 97306 66748816 ~ 66753440 (+) True LOC110526393
XM_036980753.1 mRNA downstream 104820 66756330 ~ 66776332 (+) False LOC110526948
XM_036980755.1 mRNA downstream 104820 66756330 ~ 66776332 (+) False LOC110526948
XM_036980754.1 mRNA downstream 104854 66756364 ~ 66776332 (+) True LOC110526948
TU607370 other upstream 44504 66602785 ~ 66604053 (+) True G536406
TU605959 other upstream 799116 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1487227 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1530601 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 1801453 64790322 ~ 64847104 (+) True G534453
TU608020 other downstream 361710 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 452796 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 452901 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 452901 67104411 ~ 67104908 (+) True G537029
TU608066 other downstream 458166 67109676 ~ 67110628 (+) True G537032

Expression Profile