RNA id: TU607563


Basic Information

Item Value
RNA id TU607563
length 3943
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G536585
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66928565 ~ 66932555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCACAGCGCAGGATGCTAGGGGGATGGCGAAGGAGCCAGGGACAAGGGGAGATGAAGGAAATGGGCTCTGCCACAAGGGACTGGTGGGGTAAGTGGAAATTCGAGAACAACCAACACAGAGAAACTTTAAGCTTGTGGTGTTGTCCTAGAGACGACTGAGGGGTGGGACAAAAAGAAGcgcccctcactctctctctcgctctttctctcgctctcccttctcAAGCACAACCCCCTGTGCCAGGCAACCAGCCAGGCAGCGTACGCCATGCCAACCTGCTCATCGACAGTCACGGCGCACCCTAGGAAAACACAGGAGATGAAAAGGCACCATGTCTTTTTCATATGGAAGGTGGCGTTTACGGATTTGCGGGAAAGTCACCACTTCTGAGGATGCCCGAGGAGCGCGGTGATTCGATACCCACGATCTTCGAGAGGTGTACCAGCGGGAACGCGGTGGCATCTGTCGCGGAAAAATGTAAGGGGGCGAGAGATGGTACACAACGATCAAGAGCAAATCAACACGATCGGGCATCCGTCGCGGGTCGCTTGGCAAAGATAAAGAAAGCCAAGTGCAAACAAAGACCATCTAGTGCTTCAAATGACTAATTAGAACAACAAAAGTTTGCTCTGTTAATTAGCGCGACGGACAGAATGAAAGGAAGGGGAAagataacaaacaaaacaaagcgggggaaaacaagacaaaacaaaagctcaagctgttctgtggggaggggagggtgtgaAGCTGGTGCCTGTTTTTGtgccaacccccccacccccctcctcctcctctaacacACCATTTTCATCCAGCTCTCATCAATCCGGCCGGCAGCCACTGCGATGAGGAATGTCTACCATGGGCACTGCTGCCTGCCTCCATGCCGCAGACCCTGCCATTCTGCCAatcgcctgcctgcctgccagccacaagaggggagggaggaagaaaggaCCTGAGGGACTGTGCCAACGTCTCAACAGCAGCTGtttacaaagacacacacacaaaaagaaaaAAACTGCAAACATGAGGACGCATACTAATGAACCGCCAACACATTATAATCAGCGGACAGACAGGAATTAATTTACTTTTCTCTCTGCGTTCGTTTAAATAGTTTTTGTTTTTCGCGAGAGAAAAACTTATCGCGCATCATGGTTTCCTCCAGGTGTGTGGGATTTATGCGTGACAGGAACAACTTcttgaaaaaagaaaaaaagaaaaggcAAAAACAGAAAGCATGAAAATCTACTTCAGCAGCAAGCTAAGCTATGCCAGAGaggcaggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatttatCTACATTCACAGCAATCACCAGGGAGATGAATGGCTCAGGCTGTAGGCTCTATACAGCATCCACCAGTATGGGAACCAGACTGAGGCGAGGGGGATGCCACACAGACAACAGACATGCTGGAACTCAGTGGAGGGGGCAGGGGCACAGGAGGCAGGGGGACAGGAGCAGCAGTCCcggccacagacacacacactggtggggtggggaggggaggagatacCCTACCCCAGCCGGCCTGCCTGCAGCTCCGCCAGGCGGGGGTAGGGGGGCCGTGGGAACACTTTCGTCACCCCCTCACCCACGCTTTTTAGTTTGCCCCCTCCTTGCCAACCAACCAAAGGAACTACAAAACTCCACCCTTTGTGTTTTTATTGGTGTAAAGTGGAAGGGTAAACTATGAGGAACCGATGCAGAAGGGGTACCAACCGGTTCGGTTCACGGGTCTTGGTACTTACGGGGACCGGAAGAACGTTGCCGTGGTTCCCACGAGGTCCACTGGCATCAGGCACAGAGCCAAGGATCGGCGCCGCTGCAAACAGACAGGTTGGAGGGTTTCATTAAGTTCACTAATTGCACCGGAATAATTACAACAATTAGCAAGGAAGAAATCAACATCAGCCATTGGCCATCACAAATGGATATCCCAAACTTTTTTTTCCCTCTTGCTGGATTTTTGTTGGACAACAGGGCACGGTTGTGGAATATGAATAATTGAAGAAGCCATCCAAAGGGAGGGATTATAAGATCTTTGTGCTTCATACATTGCCTTGGCATACACCACCAAGATGTCAGAGCCAGGCTGCCACCAGTAAGGATAGGCTGGTATGGATGGTGGCATCTTTTTGGGCATCTACGCCGCAGTCGCTTAAACCTGCGATCCAAATACACACAATTAACGGTTTAATTCGTAATTCTGTTGTGTTTTTTCCCGTAACCTTCACGGGCGGAACGCGTGTGGATATTATCATCTTTCGGAGCTAATGAGGTTTGGATGATCGGCCTTTTATTTAATTCCAAGGGGGATGTTAATTGCGCCACGTCTTCATTACACAAATGGATTACCAAAAAAAGAGAGCTCGcagcagagcaggagagagaaaggggggaaattgagagagagggagagattgagaaagGGGGGATATTTTCCTTCCTTCTATAATAAGACAGCATTCAAATAATGCAACACTACTCGCAAACAAGCAGAGAAAAGCTCCTGCAATGCTTGGCAATGCTAGTCTCTTCAAGTGCTATCCTGGAAAACCtggtctctgcctcctctcctttcctctctgctctctacaGCTCCAGTCCTCAGCTCTGGGGACTTTGCCTTCACTTCTCTGGATGTGGATCTTACAAAACAGGAGTGAGAATATACCCTGCCTGGAATTTAATTTCTCTCAATTGGATATTATTAGTGTTCTCCTATAATTAGTATTGAGCTTTGTTCCAGTGGTGTCTGTCGTTGGCGCCGGGCGAAGCGGAATGGAGAAGAGACAACAGACACTGTGGCGGGCACAGGCTAATGTCCTCTGTGCTTAATCATCCTTCAGCAGAATGGTTTTATGCATATTTCATTTGCATATCATTAAATCGCTAAGGCACATTGGCAACTGGCAGCGGAGAGCGAGGGAGTGGAAATGGAGGAGCCCAAAGTGTAAAAAAAGGAAAGAGCGACTCATTATGCGATGGCAATCTTCAAAGCCGTGTGCCTGCTATTCCAGCAACCTGCCAATTGGTTTTAATTGAACGTTAATTAAAAAAGTGGGCGCGCTCAACCTTTCCAAGTCGGATTAATTGAGTGTCTTCCAATCTGCGCAGCAAGGACTCGTCATACAtgcagtatatgtgtgtgtgtgtatgtaaattaTGTGGATATCTATGGTTATAGTACATTATTACAGGACgacttgaaaaaaaaatgtaatccctgTAATTACAGCACCTTTTAACGGAATGGATTTTTTTCCCCACTTTTTTTCGCAGACGATTTAGTGGAGAACAAATCGCAAATATGTATTCTGTGATCTCTGGATATCATTAATACAACAAAATCATGTTGACGAGGAAGCGGGCATTTTACTCTTAATTACATTTGACCTGCTGTAATGGTTTAACATTCTCTACTTGGGAAGGTGGCAGCTGCTGCTGGCAGCGGGCGGGCAGCGCCAGCGAGTCGGGTTgtgggaccagggaccaggggaGCTGAAACCTGGTGACTCGGGGCACAGAGATAAGCAGGGAAATCGCTGGAGGCATTCTGTCGCAACCCTTCACCATGTCCTTGGGAAAAGACAAAACCAACCCAACTGCCCAAACATGCCCCCCGTctgaaaaataaatgttgtgtAATTTATGCACAAATTAATATGCTTGCCTGGACTCTGATTGCCTGTATTAAATCATTACAGGCGATTAATCCATTGTTTCTGATTCCAGAATGTCCCCTCCTCCCACTCCCCCCCTCTGTCTGGTGCACTGTCCTTTTGTGATTGGACACAAGGGGTGCATTGTTGGCTcccaagatacacacacacacaattaattaAGGCGTACAGATTGTGGACCGTTTCTGTCTCCCCCCCACTGTCTGTTTCAGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU607373 lncRNA upstream 277055 66648557 ~ 66651510 (+) True G536409
TU607364 lncRNA upstream 341448 66583358 ~ 66587117 (+) True G536400
TU607358 lncRNA upstream 354714 66573556 ~ 66573851 (+) True G536394
TU607357 lncRNA upstream 355069 66573241 ~ 66573496 (+) True G536393
TU607356 lncRNA upstream 356173 66572059 ~ 66572392 (+) True G536392
TU608018 lncRNA downstream 79616 67012171 ~ 67012394 (+) True G536994
TU608026 lncRNA downstream 104074 67036629 ~ 67036990 (+) True G537000
TU608030 lncRNA downstream 107805 67040360 ~ 67040589 (+) True G537004
TU608033 lncRNA downstream 115734 67048289 ~ 67048510 (+) True G537007
TU608040 lncRNA downstream 140579 67073134 ~ 67073374 (+) True G537014
XM_036980753.1 mRNA upstream 152233 66756330 ~ 66776332 (+) False LOC110526948
XM_036980755.1 mRNA upstream 152233 66756330 ~ 66776332 (+) False LOC110526948
XM_036980754.1 mRNA upstream 152233 66756364 ~ 66776332 (+) True LOC110526948
XM_021607342.2 mRNA upstream 175125 66748816 ~ 66753440 (+) True LOC110526393
LOC110526947 mRNA upstream 208124 66719808 ~ 66720441 (+) True LOC110526947
XM_021607349.2 mRNA downstream 595587 67528142 ~ 67544856 (+) False LOC110526401
XM_021607350.2 mRNA downstream 595589 67528144 ~ 67544856 (+) True LOC110526401
XM_021608125.2 mRNA downstream 711259 67643814 ~ 67644573 (+) True LOC110526949
XM_021607367.2 mRNA downstream 804255 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA downstream 804255 67736810 ~ 67753397 (+) False LOC110526406
TU607370 other upstream 324512 66602785 ~ 66604053 (+) True G536406
TU605959 other upstream 1079124 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1767235 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1810609 65113280 ~ 65117956 (+) True G534653
TU605171 other upstream 2081461 64790322 ~ 64847104 (+) True G534453
TU608020 other downstream 80665 67013220 ~ 67018653 (+) True G536995
TU608058 other downstream 171751 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 171856 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 171856 67104411 ~ 67104908 (+) True G537029
TU608066 other downstream 177121 67109676 ~ 67110628 (+) True G537032

Expression Profile