RNA id: TU608054


Basic Information

Item Value
RNA id TU608054
length 208
lncRNA type intronic
GC content 0.44
exon number 1
gene id G537028
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67102182 ~ 67102389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatggatttaaatggtgctccatgggatgttcaaagtttcacatatttttttataacccaaccctgaactGTAGTcgtccacaactttgtccctgacctgtttggagagctccttggtcttcatggtgcctcttgcttagtggtgttgcagactctggggcctttcagaacaggtgtatatatactgagatcgtgTGACAGACACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608053 lncRNA upstream 317 67101662 ~ 67101865 (+) True G537027
TU608052 lncRNA upstream 6578 67095394 ~ 67095604 (+) True G537026
TU608049 lncRNA upstream 10028 67091911 ~ 67092154 (+) True G537023
TU608048 lncRNA upstream 15567 67086377 ~ 67086615 (+) True G537022
TU608047 lncRNA upstream 18858 67083085 ~ 67083324 (+) True G537021
TU608060 lncRNA downstream 6423 67108812 ~ 67109391 (+) True G537031
TU608069 lncRNA downstream 14583 67116972 ~ 67117192 (+) True G537035
TU608070 lncRNA downstream 17998 67120387 ~ 67120795 (+) True G537036
TU608071 lncRNA downstream 18503 67120892 ~ 67121170 (+) True G537037
TU608072 lncRNA downstream 24808 67127197 ~ 67127432 (+) True G537038
XM_036980753.1 mRNA upstream 325850 66756330 ~ 66776332 (+) False LOC110526948
XM_036980755.1 mRNA upstream 325850 66756330 ~ 66776332 (+) False LOC110526948
XM_036980754.1 mRNA upstream 325850 66756364 ~ 66776332 (+) True LOC110526948
XM_021607342.2 mRNA upstream 348742 66748816 ~ 66753440 (+) True LOC110526393
LOC110526947 mRNA upstream 381741 66719808 ~ 66720441 (+) True LOC110526947
XM_021607349.2 mRNA downstream 425753 67528142 ~ 67544856 (+) False LOC110526401
XM_021607350.2 mRNA downstream 425755 67528144 ~ 67544856 (+) True LOC110526401
XM_021608125.2 mRNA downstream 541425 67643814 ~ 67644573 (+) True LOC110526949
XM_021607367.2 mRNA downstream 634421 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA downstream 634421 67736810 ~ 67753397 (+) False LOC110526406
TU608020 other upstream 83529 67013220 ~ 67018653 (+) True G536995
TU607370 other upstream 498129 66602785 ~ 66604053 (+) True G536406
TU605959 other upstream 1252741 65847623 ~ 65849441 (+) True G535150
TU605427 other upstream 1940852 65156509 ~ 65161330 (+) True LOC110526356
TU605418 other upstream 1984226 65113280 ~ 65117956 (+) True G534653
TU608058 other downstream 1917 67104306 ~ 67104862 (+) False G537029
TU608055 other downstream 2022 67104411 ~ 67104862 (+) False G537029
TU608056 other downstream 2022 67104411 ~ 67104908 (+) True G537029
TU608066 other downstream 7287 67109676 ~ 67110628 (+) True G537032
TU608672 other downstream 652167 67754556 ~ 67756618 (+) True G537606

Expression Profile