RNA id: TU608060


Basic Information

Item Value
RNA id TU608060
length 580
lncRNA type antisense_over
GC content 0.63
exon number 1
gene id G537031
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67108812 ~ 67109391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGGGGGCCAAGGCGGCCATGTTGGGGTCCAGGTGGAAGCCTCCCAGCAGGAACTGGGCCTCAGCTCCAGCCGGGTCCATCTTGAGGCCTGGAGGCAGGCTCATGTTCTGGGTCAGGTAGTACTGGTAGAGCTCGGCCTCGGAGGGAGAGGGCATGGCCCCCAGGCCCAGCCGACCATGCTGCATCTGGGTCACATTCTGTTGcagtagcatcatgttgtgcatGTGCTTCTCGCTGGTCATGTGGATGCGTAGGTTCCGCGCCACGTTGGTCTCGTAGTCGCATACCTCGCAACGCCACGTGGGCTTGCTTTTTGGCTTGGTGGGCGAGGGGGAACCGCAGGGCCCCGTCATGTGAGTGGAGGActgggtggggtggtggtggtggggcgggtGGTGGGTGCTGGCCTGGGTCACAGAGGGCACGGTCACCACTCCGACCCCTCCAGGGTGCTGGCCAAACACCTGCTGCTCGGCGGAGGGGATGGAGCCTCCGTTCTGCAGGGTCTGCATGTTGTTCAGATGCTTGTCCGACTGCATGTGGATGCTCAGGTTGCCCTTGGTGGTGGTCGAGTAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608054 lncRNA upstream 6423 67102182 ~ 67102389 (+) True G537028
TU608053 lncRNA upstream 6947 67101662 ~ 67101865 (+) True G537027
TU608052 lncRNA upstream 13208 67095394 ~ 67095604 (+) True G537026
TU608049 lncRNA upstream 16658 67091911 ~ 67092154 (+) True G537023
TU608048 lncRNA upstream 22197 67086377 ~ 67086615 (+) True G537022
TU608069 lncRNA downstream 7581 67116972 ~ 67117192 (+) True G537035
TU608070 lncRNA downstream 10996 67120387 ~ 67120795 (+) True G537036
TU608071 lncRNA downstream 11501 67120892 ~ 67121170 (+) True G537037
TU608072 lncRNA downstream 17806 67127197 ~ 67127432 (+) True G537038
TU608077 lncRNA downstream 33208 67142599 ~ 67142828 (+) True G537043
XM_036980753.1 mRNA upstream 332480 66756330 ~ 66776332 (+) False LOC110526948
XM_036980755.1 mRNA upstream 332480 66756330 ~ 66776332 (+) False LOC110526948
XM_036980754.1 mRNA upstream 332480 66756364 ~ 66776332 (+) True LOC110526948
XM_021607342.2 mRNA upstream 355372 66748816 ~ 66753440 (+) True LOC110526393
LOC110526947 mRNA upstream 388371 66719808 ~ 66720441 (+) True LOC110526947
XM_021607349.2 mRNA downstream 418751 67528142 ~ 67544856 (+) False LOC110526401
XM_021607350.2 mRNA downstream 418753 67528144 ~ 67544856 (+) True LOC110526401
XM_021608125.2 mRNA downstream 534423 67643814 ~ 67644573 (+) True LOC110526949
XM_021607367.2 mRNA downstream 627419 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA downstream 627419 67736810 ~ 67753397 (+) False LOC110526406
TU608056 other upstream 3904 67104411 ~ 67104908 (+) True G537029
TU608058 other upstream 3950 67104306 ~ 67104862 (+) False G537029
TU608055 other upstream 3950 67104411 ~ 67104862 (+) False G537029
TU608020 other upstream 90159 67013220 ~ 67018653 (+) True G536995
TU607370 other upstream 504759 66602785 ~ 66604053 (+) True G536406
TU608066 other downstream 285 67109676 ~ 67110628 (+) True G537032
TU608672 other downstream 645165 67754556 ~ 67756618 (+) True G537606
TU608686 other downstream 657365 67766756 ~ 67767613 (+) True G537617
TU609823 other downstream 1569986 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 1595007 68704398 ~ 68704696 (+) True G538561