RNA id: TU608072



Basic Information


Item Value
RNA id TU608072
length 236
lncRNA type intronic
GC content 0.53
exon number 1
gene id G537038
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67127197 ~ 67127432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTAAGAAAGAGCAGAGTCCTGCCCCTCGTCTCCATACACACACTGTAGCCCTTGTTCCCCTTGGCTCTATCGCCTTAATGAAATGGCCACATGCCgtcctctcctctcgctctccaccACTCTTCTCATCCCGCTCCCTGCACTGCCTGCCCACTGCAGCACCTGTTAGATATAAATCAGCCCTACTGAGCTGTGTTTGGGAAGTGAGGCATTAAGCATGACACAACCTGTCAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608071 lncRNA upstream 6027 67120892 ~ 67121170 (+) True G537037
TU608070 lncRNA upstream 6402 67120387 ~ 67120795 (+) True G537036
TU608069 lncRNA upstream 10005 67116972 ~ 67117192 (+) True G537035
TU608060 lncRNA upstream 17806 67108812 ~ 67109391 (+) True G537031
TU608054 lncRNA upstream 24808 67102182 ~ 67102389 (+) True G537028
TU608077 lncRNA downstream 15167 67142599 ~ 67142828 (+) True G537043
TU608079 lncRNA downstream 19429 67146861 ~ 67147097 (+) True G537045
TU608081 lncRNA downstream 21880 67149312 ~ 67149512 (+) True G537047
TU608090 lncRNA downstream 44119 67171551 ~ 67171824 (+) True G537056
TU608091 lncRNA downstream 47240 67174672 ~ 67174887 (+) True G537057
XM_036980753.1 mRNA upstream 350865 66756330 ~ 66776332 (+) False LOC110526948
XM_036980755.1 mRNA upstream 350865 66756330 ~ 66776332 (+) False LOC110526948
XM_036980754.1 mRNA upstream 350865 66756364 ~ 66776332 (+) True LOC110526948
XM_021607342.2 mRNA upstream 373757 66748816 ~ 66753440 (+) True LOC110526393
LOC110526947 mRNA upstream 406756 66719808 ~ 66720441 (+) True LOC110526947
XM_021607349.2 mRNA downstream 400710 67528142 ~ 67544856 (+) False LOC110526401
XM_021607350.2 mRNA downstream 400712 67528144 ~ 67544856 (+) True LOC110526401
XM_021608125.2 mRNA downstream 516382 67643814 ~ 67644573 (+) True LOC110526949
XM_021607367.2 mRNA downstream 609378 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA downstream 609378 67736810 ~ 67753397 (+) False LOC110526406
TU608066 other upstream 16569 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 22289 67104411 ~ 67104908 (+) True G537029
TU608058 other upstream 22335 67104306 ~ 67104862 (+) False G537029
TU608055 other upstream 22335 67104411 ~ 67104862 (+) False G537029
TU608020 other upstream 108544 67013220 ~ 67018653 (+) True G536995
TU608672 other downstream 627124 67754556 ~ 67756618 (+) True G537606
TU608686 other downstream 639324 67766756 ~ 67767613 (+) True G537617
TU609823 other downstream 1551945 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 1576966 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 1683687 68811119 ~ 68811890 (+) True G538607

Expression Profile