RNA id: TU608090



Basic Information


Item Value
RNA id TU608090
length 274
lncRNA type intronic
GC content 0.43
exon number 1
gene id G537056
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67171551 ~ 67171824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACGTATGCCACTGGCCTGGGCTACAGTACAACTGGAAGAACAGGTCCTGGCTGTACAAGCTTGCATATTCAAAACCATAATCTGTAATCTGAGCCACTGCTCCTGCTAAACTCATTTACACACAGCCCTACAGCAAATGGAGGAGGCAGACATTTagcatctttctctctccagtgCTATCAATGGAAAACTAATCTACACAAACATATGCACATTTATACTATCCTCACCCTTAAAGCAGTTCAACCCAGTGTAAAAGGAATTTCTCATAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608081 lncRNA upstream 22039 67149312 ~ 67149512 (+) True G537047
TU608079 lncRNA upstream 24454 67146861 ~ 67147097 (+) True G537045
TU608077 lncRNA upstream 28723 67142599 ~ 67142828 (+) True G537043
TU608072 lncRNA upstream 44119 67127197 ~ 67127432 (+) True G537038
TU608071 lncRNA upstream 50381 67120892 ~ 67121170 (+) True G537037
TU608091 lncRNA downstream 2848 67174672 ~ 67174887 (+) True G537057
TU608092 lncRNA downstream 3786 67175610 ~ 67175785 (+) True G537058
TU608093 lncRNA downstream 4083 67175907 ~ 67176077 (+) True G537059
TU608213 lncRNA downstream 58418 67230242 ~ 67231733 (+) True G537176
TU608423 lncRNA downstream 253170 67424994 ~ 67425272 (+) True G537372
XM_036980753.1 mRNA upstream 395219 66756330 ~ 66776332 (+) False LOC110526948
XM_036980755.1 mRNA upstream 395219 66756330 ~ 66776332 (+) False LOC110526948
XM_036980754.1 mRNA upstream 395219 66756364 ~ 66776332 (+) True LOC110526948
XM_021607342.2 mRNA upstream 418111 66748816 ~ 66753440 (+) True LOC110526393
LOC110526947 mRNA upstream 451110 66719808 ~ 66720441 (+) True LOC110526947
XM_021607349.2 mRNA downstream 356318 67528142 ~ 67544856 (+) False LOC110526401
XM_021607350.2 mRNA downstream 356320 67528144 ~ 67544856 (+) True LOC110526401
XM_021608125.2 mRNA downstream 471990 67643814 ~ 67644573 (+) True LOC110526949
XM_021607367.2 mRNA downstream 564986 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA downstream 564986 67736810 ~ 67753397 (+) False LOC110526406
TU608066 other upstream 60923 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 66643 67104411 ~ 67104908 (+) True G537029
TU608058 other upstream 66689 67104306 ~ 67104862 (+) False G537029
TU608055 other upstream 66689 67104411 ~ 67104862 (+) False G537029
TU608020 other upstream 152898 67013220 ~ 67018653 (+) True G536995
TU608672 other downstream 582732 67754556 ~ 67756618 (+) True G537606
TU608686 other downstream 594932 67766756 ~ 67767613 (+) True G537617
TU609823 other downstream 1507553 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 1532574 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 1639295 68811119 ~ 68811890 (+) True G538607

Expression Profile