RNA id: TU608528


Basic Information

Item Value
RNA id TU608528
length 1820
lncRNA type antisense_over
GC content 0.52
exon number 7
gene id G537473
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67579716 ~ 67583897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGGCTCCAATTCAAGGCAGCCTGTTGCTTATGACATCCTACAGTAAGAGTAGCGTAATCACAGTGGTCGTACCTGGAAACATGACTCAAACACTGGCTCATTGTTAACCATGCTGTTATAGTGACTGACTGATCTTTCCAACAACCACTATTGACTACTGTGCTGGGCCTGACGGCTTTGTTATTAATTCATTAGTGGAGAGGCCTTGAAGGCCTGCCAATCTCAGTAATCACAGGATGATGCCCGTCCCATTGGCATCAGATTGGCTGCAATTATCTGCAGAGGGAAGCACTGAGTCAGCCGCCGACAGCTTTTCCATCCCCGGGTAAATGGATAGGCTGTGATTATTTCCTCCTTATTAAAGAACAATCCACCCAACCAGCTACATGTACTTCCTAACAGCTGGGTCATCACTTGGACAGAACCTCTGGATCAGTCTCTATCACACCGGGAGCTGACTGTTGATGGCCATGGTTGTAATACCATACTGTTCCCTGTCACTGACAGCCCATTCCTCACTCACACTAAGGTTAAGGTGAGGCTCCCAGTGAGGGGGCCCTTGATTTCAGCATTAGATTTCACTGTACTCTAGCTCAGCTGATTTAGGCCATGCAGCACTTTGCACACTCCATTGAATGTCCGGGTAAAGTAAGCAAAGGATTCATGTGTGGGCCGTCCGCACACCAAACCACACCATTACTCTTGCACCCCTGTGTGCCAAACATGGACTTGGCGCCAATGTTTTCCGTGTGCGAGGGAAGGGTGTGCGAGGGAAGGGTATTTTacaggggaagaggagggtagagcaGGCACCCACCTCTCTGACTGGATGCCGTTCTTCAGGACACCAACGTAACTCCTCTTCTTATCCAGGGCCAGGACGTCCACGTAGCCTCCACCGGCTTGGATCACCCCGGCATGGATGGCTGCCCGGCAGATACTGGAGCGCTCTGTGTAGAAGCTGTTCCCAACCACCGGAGCCCAGTAGGATGGCTCATTCTTGCAGTTGGCCGGACAGAACACTCTTGGGCAGTTGGAGTAGGGCTTCTTGAAGGGGCAGATCTCCGCCACTGTTGCATAGCAGTCCACTGATTGTCTTTCCACTTTGGACACCACAAATGCATTGCCGGCTTTGTATTTACTGAATGACTCAATGCCGTTCTTTGTTGCCTTGACGAAGAATGGCAACTTGTCTTTCCTCGTAGTGTCCACCAGACCACCATTGTTATTGATGATGCCATAGTGCATAGCAGCACGACAGATACTTGATTGCACATCATAGAAGAGCGTCCCCCACACTTTCCCTTTCTTGTTCTGGCAGTTAGCAGGGCAGTTGAATCTGTTGCAGGTTGCTCCCTTGCACTTGTCACGCATTTTGGTCTCACATTTGATGTTTTGGGCCAGGAAAGTGCTGGTGGGAGCCTTGGGAGTAGAAGGCTTGGGAGTGGAGGGCTTCTTGGGAGCAGCAGGCTTGGGTTGGGGTCTGTGGACAGGCTTGGTGGTGGTGCGGGGTGACATGGGAATCTGAGCTTTCTCCACTTCGTTCATGTCCTCAGTCTCAGAACGCTGAGAGTCCCCCTTGAAGCAGAGGTTGTCCCTGCAGCTTCCTCCATAGCTAGGAGGGCACTGGGAGCATGGGCGGCCATGTTGGTAAGGGGCCTCTCCGATCCAGTTTCCcctggggaggaggaaggagcacAGTGGTCAGGATGACTGGCTGGAAACTAATCAGCACTCAGCCGTCACGGCACATGGCCTAGTAATTATTCACGTGTTCTTTGCACATTATCACACACTCTTAAAACCTTGAGTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608525 lncRNA upstream 2327 67577077 ~ 67577389 (+) True G537470
TU608499 lncRNA upstream 63294 67516177 ~ 67516422 (+) True G537448
TU608498 lncRNA upstream 63636 67515796 ~ 67516080 (+) True G537447
TU608474 lncRNA upstream 88841 67490629 ~ 67490875 (+) True G537423
TU608450 lncRNA upstream 121383 67458044 ~ 67458333 (+) True G537399
TU608585 lncRNA downstream 15844 67599741 ~ 67600186 (+) True G537528
TU608586 lncRNA downstream 16664 67600561 ~ 67603899 (+) False G537529
TU608587 lncRNA downstream 16664 67600561 ~ 67631667 (+) True G537529
TU608592 lncRNA downstream 23357 67607254 ~ 67634590 (+) True G537533
TU608650 lncRNA downstream 119618 67703515 ~ 67708720 (+) True G537589
XM_021607349.2 mRNA upstream 34860 67528142 ~ 67544856 (+) False LOC110526401
XM_021607350.2 mRNA upstream 34860 67528144 ~ 67544856 (+) True LOC110526401
XM_036980753.1 mRNA upstream 803384 66756330 ~ 66776332 (+) False LOC110526948
XM_021608125.2 mRNA downstream 59917 67643814 ~ 67644573 (+) True LOC110526949
XM_021607367.2 mRNA downstream 152913 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA downstream 152913 67736810 ~ 67753397 (+) False LOC110526406
XM_036980769.1 mRNA downstream 152913 67736810 ~ 67753397 (+) False LOC110526406
XM_021607363.2 mRNA downstream 155525 67739422 ~ 67753397 (+) False LOC110526406
TU608066 other upstream 469088 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 474808 67104411 ~ 67104908 (+) True G537029
TU608058 other upstream 474854 67104306 ~ 67104862 (+) False G537029
TU608055 other upstream 474854 67104411 ~ 67104862 (+) False G537029
TU608020 other upstream 561063 67013220 ~ 67018653 (+) True G536995
TU608672 other downstream 170659 67754556 ~ 67756618 (+) True G537606
TU608686 other downstream 182859 67766756 ~ 67767613 (+) True G537617
TU609823 other downstream 1095480 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 1120501 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 1227222 68811119 ~ 68811890 (+) True G538607

Expression Profile