RNA id: TU608586


Basic Information

Item Value
RNA id TU608586
length 3315
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G537529
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67600561 ~ 67631667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGGTTTAACACAATCATTTATTTGAACAATAAACAAAAAGAGTAGAATGCTGGAGGATTGAGATTAAAAGACAGCATATAGTTTGTTTTCAGCTTGATATCCCAACAAGCCCTCAGCAGACAACCGTGTTAGGAAGCACAAACTAAACAGAACGACATCATTGAAGCGATACGCCAGCACATATCATCCTGACCATAATCATAAAAAAAGACTCCGGGATAAAATGTGTACAACAGAAAGCTTTCTGACAGCTTTAGTGTCTGTTTCAAACCATCTTCAAAACATTCTTCAGGGTCTGTTTCAAACCAACATTGTCACAATGAGTGTATCAGATATGACCACATAGCCATCAACACAATTGAACTAACACTTATAAGGAGTTTTATAATGATCTGTACAGATCAGCTCAATTTCCTCATATGGAATGACTGAGCCATGCTGATTGAATGAATCATGAGCTGTGGCAACAGAACTTATGATGCAGAGGTGAAACCAAAATTAGACAGAAGCATTAGCGCAATTATGAAAGGCAACAGGATCAATGTGAAGTATCCTTTGGTTTCACTtggggataaaaaaaaataaaaaaaactttacataCCCATAAGTAATAAGCAAATGACTTGAGGGAATCAAATTCTGCTTGGTTTAGACTACGAAATTGCAGTCACTTTAACATAACACATTTTCAGGACAAAATATACAACAGTAATTCATGAAAGGGAATTGTATGGGCAATTTAAATGACATTGCTCCAAACTCAAAATATGCAACACAGAAAATGCACATGGTAAGATAACTGAGTAATGGACAAAGTTTCCAGTCACTTTAAATAAAAGGGGATACAGGTATATTGAATTAGTCTCTGCTACCATCAGTGAGAGAACTACAAAGTGAGAAATGGGATAAAATAAGCTCTTCCTGTAAGATCTAAAATGCATGCCCTGCTATTCTGATGTGGGAAAAATGATTTCACACTGCCCCAACCTTCCAGTGGTCAGAAATGGGAGTGTGAGAGCCGCCTTACAAAAGGACCCATTCCCAGTTGTGTACCTCGCTTTATCCAATGACCAAGTGTGTGTGCACGTGAGaaagtgtatactgtatgtgaaatATCGTTAGAAAATAGTCTGCTTTGCCCATTAAGGACAGAGTATACAAAGGTAAACCACAATGCACCAAGCCTTCAGCAAAGTAATGTACTAGTTATGTGATTTTTGTAAAGGATTAAATACTGACAGATTTTGACATTGGTTTGCTTGAAATGTCCCTTAAGATTAGACTACGGATCAAACTTAGTggaggaaaaataaaaaataacgagAAAATAAAATATGATCAAGCAAACAACTTGTCCAATTTTATTCATTGGTGTGCTTTACCCTCAAATAGCAATTTAGATGCCATATAGTATAATTCTGGGGAAACGGTCATGGTGTTATTGAACAaattaaaaacaacaaaataacatttaAGCGAAACTCAAAAACACAATCAATGAATAATAATGACGCAAAAAGCAAGGTCTCAAACAAAACATGATTTCCTTTTGTGCGCATTTATTGTGGGGGATTTCATTTCTAGAGCCAAGCAGCAGATGTGATCCCACTTCCCCTCAACATGGACAGTCTCTCTCACTGGAGAGGAACTGCACTCAGCCACAAAAGACGAAATGCAAAGGTAAGGTACATTCCCATAAAACTTTACAGACATTTGACTTACAGTTGTCACACTCACTGGGTTGGACTCGTACATCGAGTGGCGATTTGGATTAGAAAGCCTCGCATAGCGAACCTAAGGCAGCCCCCTTTTTCTGGTGAGTTGGTGGGGTAAGGGGTCATGTGGCTGTTGTAACTCTACAAAGGCAGGCCGCCTATACATAGATGGAACCCTTAGACCAGAACAGGGAAAAAATTATAAATGAAGGATGAGGGGGGAAAGGATAGGTATAAAATTAACACGGGCCGGTGCTTGCGGTGGAATCTCAGTCTTCATTGGCATCTCTCCAGTGCTCCAGAGTACTCAAAAAGCTTTAGAACTAACAGCCACCCAGGGAGCCAAACAAGGTGACACTCAACTAGATTCAgatgtcatgttttttttttttttttttacaattttaaatCTTAAAATATCTGCAAGTGTGCATTAGCACATCCACATCTTGTTATTGATCAGATATATTATACGTGCACAGAAGCTTATTTTTAAAAATCATTTAAATCCTAAAGCACATTAAAATTGTTTTAGATCGTCATTCTAATTCCACACCCAGAAACCACAAGGTTCTTTCAAACAAAGCTGTTAAAGTTTCAGCACCTCTTCTCCTGtcattttttctattttttgaTGGCTCAAGTTTTACCTAGATTTAAAAGCATCAGAAAAGTGAGGAAGGTGGAGAAGTAAGAAGAGATGGTGGCCATGAAGAGCATCTTGCCTCTGGAGTTAGAGACTCATCCAATAACGTTTTGTCGTTTGCTGGTGCTGTGCCTTTTTCCGACGAACTCCGGCAAAATTTCAACAGGTGTTTAAACTGCTGCAAATTCATTAGGACAACAACTCCCCTtgctaaaaggcaaaactgattaTTTTACGccattttcaaaaaaaaaaaaaaaacatttgagtagATAAACAAAATTACAACTTCTCTCCAGCAGGCCAACCGTCCATCTGCAGCCTCGTGTTGTAGATAGATACTTTACCCACAGGACGAACTACCCACTGTTCCCAGTCTGAACGAGGCTGTAGGTTCAGAGGCGAGTCTCAAAGTCCCCTCCCCTCAGTCCATTCAACAGTCTCTCCTCACAGCATTAAAAAAAACAGCAGTGGCGCACAGAGAAGAGGAAGCCATCACAGGGAAATTATTTTACAACGTGTCCTTTTCCCCCTAATTCTTTCAAAAAAGATAAAAGGAAAAAAGGCATTGTTGGAAAAGCTGGCTCTCTGGAAAAGcagggatgaggggaggaagAAGAAAATCTTGCAATAGAAGAAGTTGGGCAGTGTTCCTGTtcattagtttgtgtgtgtgtgtgtgtttgaatgtatGCATGTGCACTTGAGTGTGTATGCCTGTAgtgggagtgtgtatgtgtagttgaATGTGTAAAATGAGTGttcctctgtgtgcgtgtgcatgtacgCGTGTGTGGTGTCTACAGCAGGTAGGCAGTGCGCTCAGCAGTCTGCTTCACCACCTGGTACTGGTTGATGACCTTCACTGCCTGGTCGTCAATGCGCAGCCAGCCGTTCAGACCGATGTGGAAGACATCCGTGGTGTAATGGCCACCTGTAGCGCTGTTCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608585 lncRNA upstream 375 67599741 ~ 67600186 (+) True G537528
TU608528 lncRNA upstream 16664 67579716 ~ 67583897 (+) True G537473
TU608525 lncRNA upstream 23172 67577077 ~ 67577389 (+) True G537470
TU608499 lncRNA upstream 84139 67516177 ~ 67516422 (+) True G537448
TU608498 lncRNA upstream 84481 67515796 ~ 67516080 (+) True G537447
TU608592 lncRNA downstream 3355 67607254 ~ 67634590 (+) True G537533
TU608650 lncRNA downstream 99616 67703515 ~ 67708720 (+) True G537589
TU608678 lncRNA downstream 145723 67749622 ~ 67749878 (+) True G537612
TU608683 lncRNA downstream 153226 67757125 ~ 67760325 (+) False G537615
TU608681 lncRNA downstream 153333 67757232 ~ 67762036 (+) False G537615
XM_021607349.2 mRNA upstream 55705 67528142 ~ 67544856 (+) False LOC110526401
XM_021607350.2 mRNA upstream 55705 67528144 ~ 67544856 (+) True LOC110526401
XM_036980753.1 mRNA upstream 824229 66756330 ~ 66776332 (+) False LOC110526948
XM_021608125.2 mRNA downstream 39915 67643814 ~ 67644573 (+) True LOC110526949
XM_021607367.2 mRNA downstream 132911 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA downstream 132911 67736810 ~ 67753397 (+) False LOC110526406
XM_036980769.1 mRNA downstream 132911 67736810 ~ 67753397 (+) False LOC110526406
XM_021607363.2 mRNA downstream 135523 67739422 ~ 67753397 (+) False LOC110526406
TU608066 other upstream 489933 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 495653 67104411 ~ 67104908 (+) True G537029
TU608058 other upstream 495699 67104306 ~ 67104862 (+) False G537029
TU608055 other upstream 495699 67104411 ~ 67104862 (+) False G537029
TU608020 other upstream 581908 67013220 ~ 67018653 (+) True G536995
TU608672 other downstream 150657 67754556 ~ 67756618 (+) True G537606
TU608686 other downstream 162857 67766756 ~ 67767613 (+) True G537617
TU609823 other downstream 1075478 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 1100499 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 1207220 68811119 ~ 68811890 (+) True G538607

Expression Profile