RNA id: TCONS_00032816


Basic Information

Item Value
RNA id TCONS_00032816
length 775
lncRNA type retained_intron
GC content 0.47
exon number 4
gene id XLOC_016728
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42020915 ~ 42035307 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgttgaagcaagttggagctaaactcagcaggacaccggctttccagggctgagtttggacacccctgaggtACATCATGCTAATTACAGAAATGTAATTGTCTCAGGCTTTGCTCTCGGCAACACTATTGAGTCAAAGACCAAAGGTATCTGGATGTGGTGTGTCCCTCACCCGAAAAAACAAGGACACACTTTGGTTCTGCTGGACACAGAGGGACTGGGTGATGTTGACAAGggagACTCTAAGAACGACGGCTGGATCTTCTGTTTGGCTGTTCTTCTCAGCAGTACTCTGGTGTACAACAGCCGTGGCACCATCGACAACAGCGCACTGGAGAAACTGCACTACATCACTGAGCTCACAGAGCAGATCAagatcagaacagcagaagcagcagacgaggaggatgaggaggactCAAAGTTTGTGCTTTTCTTCCCATCATTCACCTGGGTCGTGAGAGATTTTACTTTGGATTTGGTGATTGATGGAAAGAATGTTAATGAAGACCAGTACCTAGATTTTGCCCTGCAGCTGAGGAAAGGTAATAATAAGAAGGCATTGGAATACAATCTGCCCCGTCAGTGCATTCGAAACTACTTCCCATCCCGGAAGTGTTTTGTGTTCCCATCTCCAGCCTCACCTGAGAAGATGAAGCAATTAGAAAGTCTGCAAGAAAAAGACCTTGTACCAGATTTTCTGGAGGTCACAGGTCGTTTCTGTGAGCACATCTTTCGCAACAGTGTTGTGAAAACACTGAAAGGGGGGCATA

Function

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-32 Predicted to enable GTP binding activity and GTPase activity. Orthologous to human GBP1 (guanylate binding protein 1); GBP4 (guanylate binding protein 4); and GBP6 (guanylate binding protein family member 6).

Ensembl:

ensembl_id ENSDART00000144803

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032813 lncRNA downstream 45795 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00033394 lncRNA downstream 257510 41751840 ~ 41772041 (-) False XLOC_016722
TCONS_00033913 lncRNA downstream 258361 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00033393 lncRNA downstream 517225 41504477 ~ 41512326 (-) False XLOC_016718
TCONS_00033912 lncRNA downstream 581660 41441577 ~ 41447891 (-) True XLOC_016714
TCONS_00033915 lncRNA upstream 564938 42595924 ~ 42596530 (-) False XLOC_016743
TCONS_00033916 lncRNA upstream 565242 42596228 ~ 42597593 (-) True XLOC_016743
TCONS_00032846 lncRNA upstream 578395 42609381 ~ 42612407 (-) False XLOC_016744
TCONS_00033917 lncRNA upstream 597573 42628559 ~ 42628918 (-) False XLOC_016744
TCONS_00033918 lncRNA upstream 634916 42665902 ~ 42748662 (-) True XLOC_016745
TCONS_00032812 mRNA downstream 65149 41949186 ~ 41964402 (-) True XLOC_016726
TCONS_00032810 mRNA downstream 86885 41936603 ~ 41942666 (-) True XLOC_016724
TCONS_00032809 mRNA downstream 168511 41835025 ~ 41861040 (-) True XLOC_016723
TCONS_00032807 mRNA downstream 306064 41583176 ~ 41723487 (-) False XLOC_016721
TCONS_00032806 mRNA downstream 306386 41582845 ~ 41723165 (-) False XLOC_016721
TCONS_00032818 mRNA upstream 8050 42039036 ~ 42065069 (-) True XLOC_016729
TCONS_00032819 mRNA upstream 37172 42068158 ~ 42071558 (-) True XLOC_016730
TCONS_00032820 mRNA upstream 57470 42088456 ~ 42091926 (-) True XLOC_016731
TCONS_00032821 mRNA upstream 64501 42095487 ~ 42109575 (-) True XLOC_016732
TCONS_00032822 mRNA upstream 83324 42114310 ~ 42128714 (-) True XLOC_016733
TCONS_00032811 other downstream 82655 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 409439 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032800 other downstream 607829 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032799 other downstream 817457 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032788 other downstream 1434057 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032833 other upstream 341023 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032837 other upstream 373075 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 641864 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032856 other upstream 931242 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 2161813 44192799 ~ 44199697 (-) False XLOC_016779

Expression Profile

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