RNA id: TU608672


Basic Information

Item Value
RNA id TU608672
length 2063
RNA type TUCP
GC content 0.39
exon number 1
gene id G537606
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67754556 ~ 67756618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggcatcatgaggaaggaaaatgttgcttcaatatatccacatctcaagacatcagtcaggaagttaaagcttggtggcaaatgggtcttccaaatggacaatgaccccaagcatactaacaaagttgtggcaaaatggcttaaggacaacaaagtcaatgtattggagtggccatcacaaagccctgacctcaatcctatagaatatttgtgggcagaactgaaaaggcgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaacttatttggggaagcttgtggaaggctacccgaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactgagtgcatgtaaacgtctaacccactgggaatgtgatgaaataaataaaagctgaaataaatcattccctctattattctgacatttcacattcaaatAAAATTGATCTTAACTGGcttaagacagggattttttactaggattaaatgtcaggaattgtgaagcactgagtttaaatgtttttggataaggtgtatgtaaacttccgacttcaactgcttGTGTCAGGGTATATCAGCTATATTTTGAATAACTAATCTTTGCATTTTTCCAGTGATCTCACTTTGCAGAGTTCCACTCTCCAATGAGCATGTTCTAGACTCATTATTAAACCTGTTGACCCTCGCCCAGTTGGGAGAGATCTCTGGTCTTATCTGTTTCATTGACCTCATTCCAATTGATATTTATGCAACATGTGAATATATATTTTGTAAAGAAAGTTGGGGATATTTTTTTGGTTTGTTATATAATAGATGAaagtacacattttgccatgtttggttctatactgtatgtatttttttccctTCTCTTTGGTCATATGTTCTCAATTACTTGCCACAAAGGTTACCTCCGATACACAATGTTTCACAACTGAGCTCTGCAGACACATATTGACAATGTTACAGTACATGATTCGTTTTCTGGAGTAGTCCTTAAGATAGGAACTAAGCCGGTTCTCAGTTTGAGCCACTACCAGGCTAAAGCCCAGAACAGAATAGCATCCCGCTCAACAGGGGAAAAAGCTATTATATTCTAATTGTCCTTAAGTCTAGGAGTGGTTCAAACCTCTATGCAACAATGCTGTTTATTCCAAGGGAAATTTGACTCTTAAAACTATGCAGATTGCAGTAAAAAACAAATGGACTCAAATGTATGGAATTGTGCAACTCAGGCGATGCAACTCAGCGAGACCTCTTTGGCCATAGATTCAGCGCCCTGGTCCATGAACTTCTTTTCAGCAGGGTCATATCACTATCCTAATTTAAGATACACAGAGAGCAGAGCCATGCTGCAGACAGTGTTGTCACACACGGTCATTATCTTTGCTATAAAATCTGTAACAACATTTCTGCCAAGTACTGAACAATAATGAATACTGGGTATTCTGACTGATTTGAACTGGCAGCTGATATTAGTGTCATCATCCTTACACAGTGGAATAATGCAATGGAAAATGTGGAGTACGCTCTTCTTTGACATTAAAATACTACAAAAGGAAATTGTAGACAGTTTCCCAGGTTCTGTTTGTGCTTTTGAACAGCACTGTCTAAAGCTCTGCCTAGCGTGACAGTCTGGATTAGGTTAACACTGCATGTCGTGAAACTGCATATGTTCTAGAATGGTTCAATATGAACTTgtattctactgttattctatgCCTGCCTGTTTTTGTTCAATTTAATCAAAAGATGTTCTTTGAACTTTGGCCTTTTTACTAGTCTATCAGGATATTCTCTTGATGTCCATGTTTACAAAGGAAATCATTTTAAGAAGGCCAAAATCAATGAGggtaaacaaaagtgaaaaacagaaacaCTTTACGCTCGTTCTGTTGTCACTGCTCAGAACGGTACTTTTACGGCAGCCATTCTGCTACTGGATTAACAGATGTACAGATCATGTTAAAAGCAGGAATAgaatgaaataaataaacattgacTTTGACACCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608678 lncRNA upstream 4678 67749622 ~ 67749878 (+) True G537612
TU608650 lncRNA upstream 45836 67703515 ~ 67708720 (+) True G537589
TU608592 lncRNA upstream 119966 67607254 ~ 67634590 (+) True G537533
TU608587 lncRNA upstream 122889 67600561 ~ 67631667 (+) True G537529
TU608586 lncRNA upstream 150657 67600561 ~ 67603899 (+) False G537529
TU608683 lncRNA downstream 507 67757125 ~ 67760325 (+) False G537615
TU608681 lncRNA downstream 614 67757232 ~ 67762036 (+) False G537615
TU608682 lncRNA downstream 614 67757232 ~ 67760325 (+) True G537615
TU608703 lncRNA downstream 37321 67793939 ~ 67803569 (+) True G537630
TU608709 lncRNA downstream 39457 67796075 ~ 67806829 (+) False G537632
XM_021607367.2 mRNA upstream 1159 67736810 ~ 67753397 (+) False LOC110526406
XM_021607369.2 mRNA upstream 1159 67736810 ~ 67753397 (+) False LOC110526406
XM_036980769.1 mRNA upstream 1159 67736810 ~ 67753397 (+) False LOC110526406
XM_021607363.2 mRNA upstream 1159 67739422 ~ 67753397 (+) False LOC110526406
XM_021607368.2 mRNA upstream 1159 67739422 ~ 67753397 (+) False LOC110526406
XM_036980794.1 mRNA downstream 92656 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA downstream 92656 67849274 ~ 67897779 (+) True LOC110526410
XM_021607377.2 mRNA downstream 203196 67959814 ~ 67973591 (+) True LOC110526412
XM_021607380.2 mRNA downstream 250410 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 250420 68007038 ~ 68116406 (+) False adam10a
TU608066 other upstream 643928 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 649648 67104411 ~ 67104908 (+) True G537029
TU608058 other upstream 649694 67104306 ~ 67104862 (+) False G537029
TU608055 other upstream 649694 67104411 ~ 67104862 (+) False G537029
TU608020 other upstream 735903 67013220 ~ 67018653 (+) True G536995
TU608686 other downstream 10138 67766756 ~ 67767613 (+) True G537617
TU609823 other downstream 922759 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 947780 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 1054501 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 1149427 68906045 ~ 68906847 (+) True G538859

Expression Profile