RNA id: TU608682


Basic Information

Item Value
RNA id TU608682
length 3094
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G537615
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67757125 ~ 67762036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATATACAGTACAAATCTATTTTATTCAAAAAgggtacaaataaaaaaaacgcAACAAAATATAGTTATTAATGCTTTGTAAAGTTCAGGTAGGTGTAGGGTACTGTACTCTAAGGGAGCACTTTGGGTGGACAACTAAGGCTTTTGATAAGAATCAATACATATTGGTACGGCCATACGATATTAAAACTCACTATACAAAAGTTTATACAACCTGGATTATATTTGAGGATTGAATATTACATATACATCATTGCATATATTTTGCAGATTTTATACTTTAAAAAAAGGATGCTGTTTCTTTTAAAACTGGTCAAATGTCACGTAAAAAGCAATAACTTTAGTGCCAAAATAcaaatgtcaaatctgaaaataCACAACTCCATTAAAACTTTTAACCATTCTCATCTTCCTGATTTAATTCTGCATCTCTAGTGCCTGGCAACAACACCATCCCGTCCAGTCTATTTACCTCAGTCATACAAGATCAGACCAACAGGGCTACTTTATACAGGGGTCATAAAGCCTTTTTCCAGAATCACAAAACAAAAACGGACCGTACAGTTAATTATAAAGGAACGCTGTCCCTGGTTTGAAAAGCCTCACATGTAGATCAGACAGGACCAGAACTACAATACATCGACCACAACCTCACCTTCAGGGACCCACTCCCAACGTCCACTCACATTAACAacagagggtggtgtgtgtgtgtgtgtgtaaaaaacagcgagtcagttactggtccagcTTTCAAGCAATGCTAAGGACTCACCCTAACATGATCCCTCACTGTAACCTCTCCCTATCCAGAGATACAGCCCATCTCCAAATGCCTTTCTGCTTATGAATAAAACACCAGGAGAGTGCCAAGAGGGGTCAATACAACAAGAGTGAACTGATCCACCTTTGCAGCTACAGAAAAACGGGGAAACTGGGTCACTTGGAAGCATCATTCCATTAACACATTGTACAGACCTTAAGGCGTTATTGACAAGCTTGATAATAGCCATACAAAACATTATCTCTACAAACATGCACAACTGTCAAGTGATTGTTTCATTGGGTTTTGTGTTGTTTAGCGCTAATAATTAAAAACTTCAATTAACCAACCGTTAATTTTATAATACTATAAAGGATGGCAAATTAGTGCAATTTTCTTTCTTGAATAAAATTGTAATCAAAAACGTACAGGTCAAATGTTTCCCCTTTCTTACGATGGTTAAGTCAAGAGAAGAACCTAGAAAACTGCTGAAGTAGCACTTTCACGCTCCGAGCAGAAGTCTGAGAACGATGCTAGTCTGACTAACAGAAGGCGTGCTGCTAATGTGCCTGTCCACTTGACTGTCTGCTGAGAGTCAGAGTGGTCATACAGCCACTACCACATACTGTGTtcaagacagagaggaagaggtaaatAAACAGGAGGCACTGCTTTGCACCTAGAATGGTTGTCCCAGACCAGAATACTGAGTTTGATACACATGTTGTGTAGCAtggcaaagggaggagaggaggtggtaaGACACAGAAGTGCTGTTTGTGCATGTGAGGAGTTATGTTAATAATATTTTACTGAAGTAAGAATATCTGGAGGAAAGAGTGTGTTGATGAGCAGTGGGGTGTTCCAGGAAGCAGGATCATTACCTTAGCCAGTTAACTTTGATAGGCAGCCAAACAAATCTCTTGATTTTCATTGAGAAAACTAAACCCAAATATGGATTGTTGGTTGTCAAGTCAATTATACCATTACCACTTTCAAGTTGATAATTCTCGAAAAAAATGCAGGTATTTACGTTTTTGGGGGGaccgttagctggctaactcattgatcctgctttctGGAACAGCCCCCAGGGAGGTGGGACATGAGATGCAACCCATTCACAAAACATTTGACAACAGTGCACAGACACAGGCAGGCTGTTGACAGTGTCCTTTTTCAGAGCATCTGCACTCTCCACACCATCTCCTATAAAATGTGAGACAGGCCCAGCTGAGAGCCCTTGGTAAGGCAGTGGATTTTGGAGAGTAAAAGTTCACCAAAGAGAAGACTCTGACCCTACAGGGCTGAATACACACCGTAACATTCATACCATATCTAAACAAGGTATTGCTACACGTGACCAAGAGAGATCGTAAGGCCAAAATCTAACTGGATTTCCATGCACATAATTTGCATATCAGCACAAATCCATAGATGTCAATGACAGATTTACATCAAAATTTGAGTTACACATGCATACCCATCTCTAGTTATGATTTGGCCCGTACTGCTTGGCAGCGGAAGGTGGAGGTAATAGGCTGAACTGACTGGAACAAAACACTGTGCTGAACTTAGGTTAGTGACAACTAAGGGTCTGAACAAAAACCTAACAAAATAAATCCACTATATTCAGACACCTAAGAGTGGGCACTGATAAGCAATAGTACTCAGAGAGATCAGTGTACAATGACTGCATCAGCCACCTTTTTAAATAGATTACAAACCTGTCCTACCCCGTAGAAGGTACACTTGGACACTGAAGAGCAGAATACTTCAGAGTTTACTGCATAGCACATGCTTATACTACATGACGTTTTCAGGTATTCTGTGTAACTGTATTGCTTATAGCATAAAAAATTTAACAAAACGTGATCACTGTAAAAAAAATGAATTAATAAGTATTGAGAGGTTTAGGGTTAAACGTCTACTGCTCCACTGTGGAAAATCATCCAGCTCATCTCTGTATGGCATTTGACCACTACCGTATTTAAAAACATTGATATTTCAACAAAATGTCAAATTGGTTGTCATGACGGTATCAAATGGTATGTGACTCTGCCCTGATCAGGCCTAACggacctcccctctccctctccttgttgTTGAAGGCGGTCAGAGGTTTTATCCTCAGTGAACTGTGAGTCCTTGGGGGCTCCACTCAACAGAAATGTTGTGGAGGCAGTAGGGTTGGAAGGGGTGTATGAACTAGATTTGACACAGCCATCTATAAATAGTGTGGATGAGGGACTCCAGTCCATTAGAAGGCATTGGGTGTCATCACACACAATCACCAGTCTTCACCTCAGAGCTCAAAGACCAGGATACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU608678 lncRNA upstream 7354 67749622 ~ 67749878 (+) True G537612
TU608650 lncRNA upstream 48512 67703515 ~ 67708720 (+) True G537589
TU608592 lncRNA upstream 122642 67607254 ~ 67634590 (+) True G537533
TU608587 lncRNA upstream 125565 67600561 ~ 67631667 (+) True G537529
TU608586 lncRNA upstream 153333 67600561 ~ 67603899 (+) False G537529
TU608703 lncRNA downstream 33614 67793939 ~ 67803569 (+) True G537630
TU608709 lncRNA downstream 35750 67796075 ~ 67806829 (+) False G537632
TU608710 lncRNA downstream 35750 67796075 ~ 67824783 (+) False G537632
TU608707 lncRNA downstream 44590 67804915 ~ 67824783 (+) False G537632
TU608708 lncRNA downstream 44590 67804915 ~ 67824783 (+) True G537632
XM_021607362.2 mRNA upstream 3835 67739424 ~ 67753397 (+) False LOC110526406
XM_036980794.1 mRNA downstream 88949 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA downstream 88949 67849274 ~ 67897779 (+) True LOC110526410
XM_021607377.2 mRNA downstream 199489 67959814 ~ 67973591 (+) True LOC110526412
XM_021607380.2 mRNA downstream 246703 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 246713 68007038 ~ 68116406 (+) False adam10a
TU608672 other upstream 614 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 646604 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 652324 67104411 ~ 67104908 (+) True G537029
TU608058 other upstream 652370 67104306 ~ 67104862 (+) False G537029
TU608686 other downstream 6431 67766756 ~ 67767613 (+) True G537617
TU609823 other downstream 919052 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 944073 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 1050794 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 1145720 68906045 ~ 68906847 (+) True G538859

Expression Profile