RNA id: TU608708



Basic Information


Item Value
RNA id TU608708
length 1587
lncRNA type read_through
GC content 0.36
exon number 2
gene id G537632
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67796075 ~ 67824783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catacagtatgtggGTTTTACTCACCTTGCGAAATCTTGGTATTTTTCATCATGACAATGACAGTAACAAACAGGCAGAAGAAGAACAAGGCTCCCACTACATACAGTGGTATGTAAGGATCCCCTTTTAATAAAACACAAAGCATTCAGAATGAAGATCAATTAGGTATTATTCATGATCATTTCATGTATTAGTAATAACAGTATACTGTGACTCACCAGGAGTATATAACAGGGCTGTGTCATTCCTATTGGGGTGGTTGTTGAATTCTCCATTCACAGTGACTGTGACATTAGTTATTACCTTCCAGTGCCCTTTTCTATTCTTAAGCACCTGTAAGGCACAAACATACTGTCCGCTGTCTGAATATGTGGCATTGCTGATCTTAAGGTTATGAAAGATAGGGACTGTTAGGGGAATAGATGAAGTATTTGACCTTCGTTTCAGCAGGGCCTCATCAATGAGACAATGGTGGTCATATAATTGTCCATTACTATCAAAAGAATAAGAATAAAGACATGTGCTACTGTTGCCACTGACGGTTTTGATCCAATACAATGAAAATGGAAGGTGAGAGTAATCTTTGGCTACTGTGAAATTACATGCAAGGTTGACTGATTCTCCATGCTGTTTGGTAACAGACGTTTTAGTTTCCACATCAGAGTAGAATATCACCACTACAGAAACAGAACATAATTTGATGttaaatattttcataaacagatgtatatgtatgtatatacaatatattgtacagtatactgtaatgTGAGTTGTATATCATTTAGAAATTGTGAAAGTTAGGAAATGTGAACTTACTCTCTGGTTCAACAAATGCCACAATAAATGATTCCACCTGATGTTTTGAAGGTTTAAAGGGGAATAAGTGTTGGTTATTTGATGGAAAGGTATGAAAACATGCAAAGAATCCAGTGACGTGTTTCCCcaatttcatatttaaacattgtTTGATACTGTTTTTGCAGGGAGTTTTTTCtaatgtaaatactgtattattGCACTTCGGATCTTGGTCACATTTCTTCTCATTGTCATGAAGACTGCAATTAAAAGTGCAATCCACCATATTGTCTTCATTTAGATCAAGTTGCCAAATTCTCTCTTCACATTGTAAGGATATAGCTTCCTCTTTCTCTTGATAATTTAGATAAGTGTTCCCTTTGAGAGAGAAAACAATTTCCAAAGTTAGAATCAAGCTCCTCGATTGTAGACTCACAAACCCTATTATTCAAGTCTTAAACTGTTGATAAAAATAGTTACCGACCTTGACATTTTCCTACGAGAGTCATCACCATGAAGACAGATAGCATATCCATGATCATTGAACTTAGATTACAAAGCTGTTTTGTTTGTGATTCACAGAATGAGGAAACAGAGCAGAATATCACAGGAAGGAAGAATGAACAGAGGGAGTTTGTGGCGATGGATGatatacagttgatgttgaaaggTTAACAAACTACATTTTTGGCaagccggttaggacatctactttgtgcatgacacaagtcatttttccaataattgtttacagacagattatttcacttataattcactgtttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608703 lncRNA upstream 1346 67793939 ~ 67803569 (+) True G537630
TU608681 lncRNA upstream 42879 67757232 ~ 67762036 (+) False G537615
TU608683 lncRNA upstream 44590 67757125 ~ 67760325 (+) False G537615
TU608682 lncRNA upstream 44590 67757232 ~ 67760325 (+) True G537615
TU608678 lncRNA upstream 55037 67749622 ~ 67749878 (+) True G537612
TU608720 lncRNA downstream 6731 67831514 ~ 67831871 (+) True G537638
TU608721 lncRNA downstream 7721 67832504 ~ 67832742 (+) True G537639
TU608722 lncRNA downstream 8606 67833389 ~ 67833641 (+) True G537640
TU608724 lncRNA downstream 10518 67835301 ~ 67835571 (+) True G537642
TU608736 lncRNA downstream 75017 67899800 ~ 67901041 (+) True G537654
XM_021607362.2 mRNA upstream 51518 67739424 ~ 67753397 (+) False LOC110526406
XM_036980794.1 mRNA downstream 24491 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA downstream 24491 67849274 ~ 67897779 (+) True LOC110526410
XM_021607377.2 mRNA downstream 135031 67959814 ~ 67973591 (+) True LOC110526412
XM_021607380.2 mRNA downstream 182245 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 182255 68007038 ~ 68116406 (+) False adam10a
TU608686 other upstream 37302 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 48297 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 694287 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 700007 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 700053 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 854594 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 879615 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 986336 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 1081262 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 1171300 68996083 ~ 69002828 (+) True G538877

Expression Profile