RNA id: TU608713



Basic Information


Item Value
RNA id TU608713
length 836
lncRNA type read_through
GC content 0.40
exon number 2
gene id G537635
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67813043 ~ 67830909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTGATAGGTGGCTGTGGAGTTTTTTTCAGATCGGTCTGCATGAAATATAAAACAGAGATAGTTTGTTAGTCTATAATAAGCTAACTAAATTATGCACAACATATAGCTAGTGAATTGAACAAGTAatcctagctagctaactactcaGTAATAGCAAGTAACTGTAAGTATACCGAGGACAGGGTAACTTTGCTAGTCAAGTAAGGTGGTAGGATTTAAAGGTTAGTTTCAAGGGCTTCACAGAAAACATTATTAATAGCTTGAGTCCAATAACTAAAGATGATTAATGGATACTTCCAAGATTACAGTGAGAAAAGAATGTCAAACGTTAATTAACTAACTTGTCCCTTGGCTAGAACAATAACAGCTAAAAAAATAAACTGCTGAAAATGTGAAGTAGTCAACAATACAGTCAATTTTTTGAGATAGATTTCCCCATATGGATCAGGCAGGGATAGCTTGCTGGGTATCTCTTTCCGTTTCGTGTCAAcacagctgctgtgctgtgctggcgAGCTCTGGTTGTCCTCCTCGCGAGCAAGTTACTGGTAGCCAGCTAGCATTGTAATTGGCTGCTAGCAAGCAACTTTTACGTCGTCAAACaacctagctagctttagctaacTAGCAAGCATTCCATTCGCAGAACTTTGCGAACGCCTAGCTGCAGACCGTGAGTTCATTCACTAATTTACTGGAGATGAACTCCACAACGTAAACCCTGCTGGCATACAGCAGTGATAACATTCGTATTTAGCTAGCAGCATTATATCCAAGGCTTTGCTATCCTTTTTGCTATGGACACAACGGCCATGTTTCCATtcgggaggagaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608709 lncRNA upstream 6214 67796075 ~ 67806829 (+) False G537632
TU608703 lncRNA upstream 9474 67793939 ~ 67803569 (+) True G537630
TU608681 lncRNA upstream 51007 67757232 ~ 67762036 (+) False G537615
TU608683 lncRNA upstream 52718 67757125 ~ 67760325 (+) False G537615
TU608682 lncRNA upstream 52718 67757232 ~ 67760325 (+) True G537615
TU608720 lncRNA downstream 605 67831514 ~ 67831871 (+) True G537638
TU608721 lncRNA downstream 1595 67832504 ~ 67832742 (+) True G537639
TU608722 lncRNA downstream 2480 67833389 ~ 67833641 (+) True G537640
TU608724 lncRNA downstream 4392 67835301 ~ 67835571 (+) True G537642
TU608736 lncRNA downstream 68891 67899800 ~ 67901041 (+) True G537654
XM_021607362.2 mRNA upstream 59646 67739424 ~ 67753397 (+) False LOC110526406
XM_036980794.1 mRNA downstream 18365 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA downstream 18365 67849274 ~ 67897779 (+) True LOC110526410
XM_021607377.2 mRNA downstream 128905 67959814 ~ 67973591 (+) True LOC110526412
XM_021607380.2 mRNA downstream 176119 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 176129 68007038 ~ 68116406 (+) False adam10a
TU608686 other upstream 45430 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 56425 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 702415 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 708135 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 708181 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 848468 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 873489 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 980210 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 1075136 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 1165174 68996083 ~ 69002828 (+) True G538877

Expression Profile