RNA id: TU608720



Basic Information


Item Value
RNA id TU608720
length 358
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G537638
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67831514 ~ 67831871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAATATACTGTGACTCACCTGGAGTATATAACAGGGCTGTGTCATTCCTGTTGGGGTGTTTGTTGAATTCTCCATTCACAGTGACTGTGACATTAGTTATTACCTTCCAGGGCCCTTTTCTATTCTTAAGCACCTGTAAGGCACAAACATACTGTCCGCTGTCTGAATATGTGGCATTGCTGATCTTAAGGTTATGAAAGTTAGGGTTTGTTAGATTTAGATTAAGTATTTGACCTTCGTTTCAGCAGGGTACGaaagctgttgttctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgaaaataagaatttgttcttaactgacttgcctagttaaattagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608713 lncRNA upstream 605 67813043 ~ 67830909 (+) True G537635
TU608710 lncRNA upstream 6731 67796075 ~ 67824783 (+) False G537632
TU608707 lncRNA upstream 6731 67804915 ~ 67824783 (+) False G537632
TU608708 lncRNA upstream 6731 67804915 ~ 67824783 (+) True G537632
TU608715 lncRNA upstream 10421 67813385 ~ 67821093 (+) False G537636
TU608721 lncRNA downstream 633 67832504 ~ 67832742 (+) True G537639
TU608722 lncRNA downstream 1518 67833389 ~ 67833641 (+) True G537640
TU608724 lncRNA downstream 3430 67835301 ~ 67835571 (+) True G537642
TU608736 lncRNA downstream 67929 67899800 ~ 67901041 (+) True G537654
TU608781 lncRNA downstream 108684 67940555 ~ 67941516 (+) True G537699
XM_021607362.2 mRNA upstream 78117 67739424 ~ 67753397 (+) False LOC110526406
XM_036980794.1 mRNA downstream 17403 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA downstream 17403 67849274 ~ 67897779 (+) True LOC110526410
XM_021607377.2 mRNA downstream 127943 67959814 ~ 67973591 (+) True LOC110526412
XM_021607380.2 mRNA downstream 175157 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 175167 68007038 ~ 68116406 (+) False adam10a
TU608686 other upstream 63901 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 74896 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 720886 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 726606 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 726652 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 847506 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 872527 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 979248 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 1074174 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 1164212 68996083 ~ 69002828 (+) True G538877

Expression Profile