RNA id: TU608724



Basic Information


Item Value
RNA id TU608724
length 271
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G537642
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67835301 ~ 67835571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCTTAGGTAGCGggatgacttttgcttccctccaagcctggGGGCACACacattctagtaggcttaaattgaaaatatggcaaataggagtggcaatattgtccactattatcctcagtaattttccatccaatttgTCAGACctcggtggcttgtcattgttgatagacaacaacaattttttcacctcttccacactcactttacggaattcaaaaccacaatgcttttctttcataatttggtcagatatacttggatgtgtagtgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608722 lncRNA upstream 1660 67833389 ~ 67833641 (+) True G537640
TU608721 lncRNA upstream 2559 67832504 ~ 67832742 (+) True G537639
TU608720 lncRNA upstream 3430 67831514 ~ 67831871 (+) True G537638
TU608713 lncRNA upstream 4392 67813043 ~ 67830909 (+) True G537635
TU608736 lncRNA downstream 64229 67899800 ~ 67901041 (+) True G537654
TU608781 lncRNA downstream 104984 67940555 ~ 67941516 (+) True G537699
TU608808 lncRNA downstream 135754 67971325 ~ 67972779 (+) False G537720
TU608809 lncRNA downstream 136137 67971708 ~ 67972779 (+) True G537720
TU608810 lncRNA downstream 145995 67981566 ~ 67982894 (+) True G537721
XM_021607362.2 mRNA upstream 81904 67739424 ~ 67753397 (+) False LOC110526406
XM_036980794.1 mRNA downstream 13703 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA downstream 13703 67849274 ~ 67897779 (+) True LOC110526410
XM_021607377.2 mRNA downstream 124243 67959814 ~ 67973591 (+) True LOC110526412
XM_021607380.2 mRNA downstream 171457 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 171467 68007038 ~ 68116406 (+) False adam10a
TU608686 other upstream 67688 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 78683 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 724673 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 730393 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 730439 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 843806 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 868827 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 975548 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 1070474 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 1160512 68996083 ~ 69002828 (+) True G538877

Expression Profile