RNA id: TU608736



Basic Information


Item Value
RNA id TU608736
length 784
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G537654
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67899800 ~ 67901041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCAAGGCACTGCAAATATCCATAGATATCCTTTATATATTCAGAGCACAGTTGTGGCATGTCTGAATCCCCTTCATCAATGTCTTCTACAGCAAGTAGAGCTACTGAGAACGCCTGACACAATTCCTCTTCTTTCATGGACACGTTAGCAGACTCTTCAGGCTGAGGAACTGGGGAACGTTTAGTCCGAACAGCTGCTGGCTGGTCTTTTTGGTTCATAGATTGTTTGGTTGAAGCCTTAGCAGCAACAGTCTTCTTGGACGGCACCGCTTTGCTGGCATTGGGAAAGTTGGACAGCTCTCCAAGCACAGCCCTTCTTGCTCCAGCTACGTTTGCTTTTCCCATTAGTGCTGGGTTGTCTGCGTTCCTTAACTGTTTAAGACAAACGCAGCACGAACTTCCAATGACGACATCTTTACGCTTTGTTAAAAACAAGGCAGTTAGATAGCCAGCTATAATGGGCAAAACTCCGCTTTTAGTTCTGTTGTTTGCTCGCTATCTCCACTGACACAAGGCCCAAGTAAACAAGTCTCAACGAACAATTCCACAGTCATTCAAATACCACTCTGTTGATTCTAATTGGATACCGCTTCATAGAATGCACCTCTTTCATTGGTTGCCAAAGATGAATCACGAATGACGTCATACAATCAGAACGGATCtaatttcttttcttttttttcaaaaacaaatcAATACAGAAAGTACATGGGGGAACACAAGTATACATAAATAAGATACAAAGGACAATtgggctagggggtacaatatcacattacacaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608724 lncRNA upstream 64229 67835301 ~ 67835571 (+) True G537642
TU608722 lncRNA upstream 66159 67833389 ~ 67833641 (+) True G537640
TU608721 lncRNA upstream 67058 67832504 ~ 67832742 (+) True G537639
TU608720 lncRNA upstream 67929 67831514 ~ 67831871 (+) True G537638
TU608715 lncRNA upstream 78707 67813385 ~ 67821093 (+) False G537636
TU608781 lncRNA downstream 39514 67940555 ~ 67941516 (+) True G537699
TU608808 lncRNA downstream 70284 67971325 ~ 67972779 (+) False G537720
TU608809 lncRNA downstream 70667 67971708 ~ 67972779 (+) True G537720
TU608810 lncRNA downstream 80525 67981566 ~ 67982894 (+) True G537721
TU608894 lncRNA downstream 207958 68108999 ~ 68109551 (+) True G537802
XM_036980794.1 mRNA upstream 2021 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA upstream 2021 67849274 ~ 67897779 (+) True LOC110526410
XM_021607362.2 mRNA upstream 146403 67739424 ~ 67753397 (+) False LOC110526406
XM_021607377.2 mRNA downstream 58773 67959814 ~ 67973591 (+) True LOC110526412
XM_021607380.2 mRNA downstream 105987 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 105997 68007038 ~ 68116406 (+) False adam10a
XM_036980804.1 mRNA downstream 105997 68007038 ~ 68116406 (+) True adam10a
LOC118965064 mRNA downstream 159595 68060636 ~ 68063992 (+) True LOC118965064
TU608686 other upstream 132187 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 143182 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 789172 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 794892 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 794938 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 778336 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 803357 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 910078 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 1005004 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 1095042 68996083 ~ 69002828 (+) True G538877

Expression Profile