RNA id: TU608781



Basic Information


Item Value
RNA id TU608781
length 845
lncRNA type antisense_over
GC content 0.63
exon number 2
gene id G537699
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67940555 ~ 67941516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCACAGCTGCGCTGCTtggctggctgctgctgctgccgtcTACATACAGCTCGTCCTCTGCCTCTGTGGACGAGGGTGAGGATGACCCGCTGGTCAGCTCCTCGCTGGAGCTGCTGGTGCTGTGGAGCAGCGCGTACTTCCTGCGAGCGATTACCTCCCGCTTCTTCCTCTGGAGAAGTAGGCGCTCTTTCTGCTTCTGAGTCCGCTGGATGCCGCCGGACCCAGGCTTCACAATCCGCTTCCTATGCAGTGACCGCCGCCCGCTCAGGCACGGCCGCTTCAGCAGCACCGGCTGCGGTCCCCCTGCTGCTCCCGTCCCTCCagcctccacctcttcctctgaGCTCATAGTATCTGAATCCCCGAAGCGCAggctggaggagggagaggaggcacaGTCACTGAATGAGGACTCTGGGTTGCGTTCGTCCTCACTGCGTCGCTCCAAGAGATCTGGCTGGTGGCGCTGAAGGAGAAGAGAGCCCTCACTGACACGACCCTCCTTCAGGGAGCAGTCCGAGGGCCCTGGCTGTTGGCTCTTGCGCTTTTTGCGTCCAGGCTGGCCCCTGTCTGGGTCTCTGCGGGCCCCTATGTCCCTCAGGGGCCGGTGCCTGGTATCGGCACACAGTGGTGCAAACTCGCTGCCTGCCTTGCCGATCACCTCCATGTTGGCAGGGAAGCTCTTAGCCGTCTCCATGGGCTCTGGGTTGGCCAGCGGACCCTTCAGGTGCTCCTGTCTACCCTGGGCCTCAGAGGGCACCTCGCTCTTCATGCTGCCTGGTCCACGCAGACGCAATGCCAACTAAACTTCCGCTAGCTCCTATAGGTCCATTGGCGGGCCCGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608736 lncRNA upstream 39514 67899800 ~ 67901041 (+) True G537654
TU608724 lncRNA upstream 104984 67835301 ~ 67835571 (+) True G537642
TU608722 lncRNA upstream 106914 67833389 ~ 67833641 (+) True G537640
TU608721 lncRNA upstream 107813 67832504 ~ 67832742 (+) True G537639
TU608720 lncRNA upstream 108684 67831514 ~ 67831871 (+) True G537638
TU608808 lncRNA downstream 29809 67971325 ~ 67972779 (+) False G537720
TU608809 lncRNA downstream 30192 67971708 ~ 67972779 (+) True G537720
TU608810 lncRNA downstream 40050 67981566 ~ 67982894 (+) True G537721
TU608894 lncRNA downstream 167483 68108999 ~ 68109551 (+) True G537802
TU608836 lncRNA downstream 175977 68117493 ~ 68117835 (+) True G537744
XM_036980794.1 mRNA upstream 42776 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA upstream 42776 67849274 ~ 67897779 (+) True LOC110526410
XM_036980768.1 mRNA upstream 187158 67739973 ~ 67753397 (+) False LOC110526406
XM_021607377.2 mRNA downstream 18298 67959814 ~ 67973591 (+) True LOC110526412
XM_021607380.2 mRNA downstream 65512 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 65522 68007038 ~ 68116406 (+) False adam10a
XM_036980804.1 mRNA downstream 65522 68007038 ~ 68116406 (+) True adam10a
LOC118965064 mRNA downstream 119120 68060636 ~ 68063992 (+) True LOC118965064
TU608686 other upstream 172942 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 183937 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 829927 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 835647 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 835693 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 737861 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 762882 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 869603 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 964529 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 1054567 68996083 ~ 69002828 (+) True G538877

Expression Profile