RNA id: TU608809



Basic Information


Item Value
RNA id TU608809
length 1043
lncRNA type intronic
GC content 0.39
exon number 2
gene id G537720
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67971325 ~ 67972779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGGTTAAATAGTCATGACATTGTTCCAAAATGAGCCCTACAAATAGCACTGTTGGGTGATCAGAAAAGCTGTAATCAATCAACAaccaaatgtatatatttaattCACATCTGTTGATAATATCCCATTTAGAAAGGTTTGAGAATCTGTGTAAAACATCACACAACAGTTGAAAAGGAAATGGCACAAGGAAATCAAGAGTAGGTGGTCtatggagataggtgggatgggctgagagaaaCCGAGGGGTGGATTTAATCTGTAATAGTTGTGACTGAAATGAATATATATCATGTGTATCGGACTTGTCTGAGCACTATGATTTAGGCTTGGGTGGTATCCGTATTTCCATACCGTCATTGTGCCATGCCGGGATATTCTGTAATACACCATAAtacctacactgaacaaaagGAGCACTATTTTCAAACCCCACTGGATCTTCTGTAATCCggaggttagcaatgctaacaagtagATGTAAAAGCCCATAGATAATGCTAACTAAATACTAAAGAGGATATTGTGTACAGTCTCTGACCTAAAGTATTTGCAGGACAGACAAACCAGCTCAGTTATACAAGTAACTAAAAAAATATCCAcaaggctcttgatccaggagaggattctctgctgttaccaagcTAAGGTTGATTTTGAATGAAGCTAAGCACTTAGCTAGATGGCTAAatagctactaaattagcaaaccaaatcACAACTGTAGcgcatttagcacattttagacagttaatAGGTATAAGATAACGAACTCGATCACCTGGCGTGTGCTACACAAGTGAGTGActcacaggtagcctagtggttagtgttggactagtaactggaaggttgcaagatcaaatccctgagctgacaaggtacaaatctgtcgatctgcccctgaacaaggcagttaacccactgttcctaggcctccattgaaaataagaatttgttcttaactgacttgttaaataaacTTTTAAAAAACAAGGCTCTGGTTGTTGTGCTTATAAACAAACACCATGTGACTGAGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608781 lncRNA upstream 30192 67940555 ~ 67941516 (+) True G537699
TU608736 lncRNA upstream 70667 67899800 ~ 67901041 (+) True G537654
TU608724 lncRNA upstream 136137 67835301 ~ 67835571 (+) True G537642
TU608722 lncRNA upstream 138067 67833389 ~ 67833641 (+) True G537640
TU608721 lncRNA upstream 138966 67832504 ~ 67832742 (+) True G537639
TU608810 lncRNA downstream 8787 67981566 ~ 67982894 (+) True G537721
TU608894 lncRNA downstream 136220 68108999 ~ 68109551 (+) True G537802
TU608836 lncRNA downstream 144714 68117493 ~ 68117835 (+) True G537744
TU608897 lncRNA downstream 147047 68119826 ~ 68130306 (+) True trnar-acg-5
TU608907 lncRNA downstream 165471 68138250 ~ 68138963 (+) True G537815
XM_036980794.1 mRNA upstream 73929 67849274 ~ 67897779 (+) False LOC110526410
XM_036980795.1 mRNA upstream 73929 67849274 ~ 67897779 (+) True LOC110526410
XM_036980768.1 mRNA upstream 218311 67739973 ~ 67753397 (+) False LOC110526406
XM_021607380.2 mRNA downstream 34249 68007028 ~ 68116406 (+) False adam10a
XM_036980803.1 mRNA downstream 34259 68007038 ~ 68116406 (+) False adam10a
XM_036980804.1 mRNA downstream 34259 68007038 ~ 68116406 (+) True adam10a
LOC118965064 mRNA downstream 87857 68060636 ~ 68063992 (+) True LOC118965064
trnar-acg-5 mRNA downstream 147051 68119830 ~ 68119902 (+) False trnar-acg-5
TU608686 other upstream 204095 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 215090 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 861080 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 866800 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 866846 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 706598 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 731619 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 838340 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 933266 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 1023304 68996083 ~ 69002828 (+) True G538877

Expression Profile