RNA id: TU608914



Basic Information


Item Value
RNA id TU608914
length 581
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G537819
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68144881 ~ 68157426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaatttttttcccattcctccttgcaaaacagctcaagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcacagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608907 lncRNA upstream 5918 68138250 ~ 68138963 (+) True G537815
TU608897 lncRNA upstream 14575 68119826 ~ 68130306 (+) True trnar-acg-5
TU608836 lncRNA upstream 27046 68117493 ~ 68117835 (+) True G537744
TU608894 lncRNA upstream 35330 68108999 ~ 68109551 (+) True G537802
TU608810 lncRNA upstream 161987 67981566 ~ 67982894 (+) True G537721
TU608948 lncRNA downstream 55724 68213150 ~ 68213458 (+) True G537851
TU608954 lncRNA downstream 61627 68219053 ~ 68219290 (+) True G537857
TU608977 lncRNA downstream 80208 68237634 ~ 68238106 (+) True G537877
TU609137 lncRNA downstream 288098 68445524 ~ 68448895 (+) True G538001
TU609162 lncRNA downstream 330256 68487682 ~ 68526289 (+) True G538021
trnar-acg-5 mRNA upstream 24979 68119830 ~ 68119902 (+) False trnar-acg-5
XM_021607380.2 mRNA upstream 28475 68007028 ~ 68116406 (+) False adam10a
XM_021607382.2 mRNA downstream 7623 68165049 ~ 68188551 (+) True aldh1a2
XM_021607385.2 mRNA downstream 251791 68409217 ~ 68433079 (+) False LOC110526420
XM_021607387.2 mRNA downstream 251791 68409217 ~ 68433079 (+) False LOC110526420
XM_021607388.2 mRNA downstream 251791 68409217 ~ 68433079 (+) False LOC110526420
XM_036980816.1 mRNA downstream 251791 68409217 ~ 68433079 (+) False LOC110526420
TU608686 other upstream 377268 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 388263 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1034253 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1039973 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1040019 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 521951 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 546972 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 653693 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 748619 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 838657 68996083 ~ 69002828 (+) True G538877

Expression Profile