RNA id: TU608921



Basic Information


Item Value
RNA id TU608921
length 523
lncRNA type read_through
GC content 0.43
exon number 2
gene id G537826
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68155288 ~ 68191428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atatcgacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaacccccataaataaagccagactacggtttgcaactgcacaatggGACAAATATCaaacttttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggtcataatgatcatcgttatgtttggaggaaaaaggggaggcttgcaagctgaagaacaccatcccaaccttgaagcacggggagggtggcatcatgttgtgggagtgctttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgagggaggaaaaatatgtggaaatattgaagcaacatctcaagacatcagttaggaagttaaagcttggttgcaaatgcatcttccaaatggacaatgccaccaagcgtacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaagtcctgacctcaattttatagaacatttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU608907 lncRNA upstream 16325 68138250 ~ 68138963 (+) True G537815
TU608897 lncRNA upstream 24982 68119826 ~ 68130306 (+) True trnar-acg-5
TU608836 lncRNA upstream 37453 68117493 ~ 68117835 (+) True G537744
TU608894 lncRNA upstream 45737 68108999 ~ 68109551 (+) True G537802
TU608810 lncRNA upstream 172394 67981566 ~ 67982894 (+) True G537721
TU608948 lncRNA downstream 21722 68213150 ~ 68213458 (+) True G537851
TU608954 lncRNA downstream 27625 68219053 ~ 68219290 (+) True G537857
TU608977 lncRNA downstream 46206 68237634 ~ 68238106 (+) True G537877
TU609137 lncRNA downstream 254096 68445524 ~ 68448895 (+) True G538001
TU609162 lncRNA downstream 296254 68487682 ~ 68526289 (+) True G538021
trnar-acg-5 mRNA upstream 35386 68119830 ~ 68119902 (+) False trnar-acg-5
XM_021607380.2 mRNA upstream 38882 68007028 ~ 68116406 (+) False adam10a
XM_021607385.2 mRNA downstream 217789 68409217 ~ 68433079 (+) False LOC110526420
XM_021607387.2 mRNA downstream 217789 68409217 ~ 68433079 (+) False LOC110526420
XM_021607388.2 mRNA downstream 217789 68409217 ~ 68433079 (+) False LOC110526420
XM_036980816.1 mRNA downstream 217789 68409217 ~ 68433079 (+) False LOC110526420
XM_036980815.1 mRNA downstream 218343 68409771 ~ 68433079 (+) False LOC110526420
TU608686 other upstream 387675 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 398670 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1044660 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1050380 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1050426 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 487949 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 512970 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 619691 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 714617 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 804655 68996083 ~ 69002828 (+) True G538877

Expression Profile