RNA id: TU609730


Basic Information

Item Value
RNA id TU609730
length 1722
RNA type TUCP
GC content 0.43
exon number 2
gene id G538460
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68510315 ~ 68516681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctGCAATACTGTTTATGgctttttcaagttttatgtgtgcttgttttttttaaatggttgaatGAATAAACAACGATTTAGTCCACTTCAAAAAGGTATAGTGTTTCTAAATGTATATTTCTTGTCTGACTCAATGTCTGAACAGGTTTTCAAAACCAAATGTATGGAAGGCCTCTACACAAACAGAGCAGTAAACAGTCCATCCAAAATGTGAAAGTACTAGACTATAATACTCATAATCTTCCTCTTCTTCCATGCCCTGGTTCTCTCAGGAAAACACATCATATGTTGAAAATTAAGGTCAAATCACAAAGTAGAGGaattctctctctcggtctctggaGCCCCGGTGTGGTGGATATATTATCTTGTCATAAAGAATGTCATATAAAAAAAGATAAGTTCAATAATGAAAATAGAAAACAATGAAAAAGCTGTGTAGAATTCTGAATAAGTGCAGCTCCTACTGAACAGACCTTTCCCATTATAGGGTAGAGAAAGGCCAGAGTGATTTATTTTGATGAGGTTTATCAGATAAAACATCCACTTACCGGTATGTATAAAAAATAATTATAAGTCGAAGAATGCTTTGCAATTAGCCTCTGTTTTTAAGCCTCAGTTGTGGTGGTAATGTAAGGGAAAGGACGGCCTTGGCCAAGTGTTTCAACTGCAAGGAGTTAGTTAATGGTCTGTGCAGGAGAAGAGGACAATTTTCTGCTCCATGGAGAGAGTCTGCCTGCCAACAAACCACCTCAGAGAGGGACAAAGCTGGGTCTGCATGTGGGGTCTTCTGGTCTGGATGCACCTGCTCTGCAGCCACTTTGCCACCAAACAAAGCCCCTTCCTGTAGCAGCTTCCAAAACCACAGCTTGCAGAAAAACTGGTTCCGCCAGGCATACTGTACTGCTCAAACGTCCATACACGTATCCATGGACATTAAGTGAGCCTCTCAACATGGAAAACAAGACGAATCACATAATCCTTTCTCATCTTAAAAACTGTTTCCATACGCTCTACTCACTTTGTATTTATTCGCTCTACTGAAGCTAAATCCATCAAGACAAGAGGTCTTATACACATTTGCCTCAGATCTCGATAAGATCACAGGCCAGATAAAAAAAGGTAAGAGTTCAGGGGGAACAAATTACACCATTTTGATAGATCACTATCAAGGTCACAAGGTTTACTAAGGCAATTTAGAAAAAAATCTGTTCTGGTGCTCTGATGCATCAAAAAAAGAACACAAAAACGTACATGCGGTCAGAACTGCCaagcagaagaaatatcagcctgCGCAGAGAAGTGCGAGATTGAACTttactcaactttcCCGTACTCTGGTGACAGGGGAGGCAAAGCCAAGGCTAGCTGCCCTGGAATCACCTTCATGTGGACAGAGCTGTGTGCTAGGCTCTCTGCGGGGCTGCGGGTTGGCACACAGAGACCGCTCTCCTCACCATGGCTGCTCAGGCTCTCTGACAGAGGATCCGTGTTGCTTCTCCTCGACGCAAAGTGCAAGCGGAGCCGGCGTGCCATTCGTCTAACGCTCTAATCCCTGGGAGCCAGTAGTGAGCATGGCAAGGCAAGAGACCTGCTGGGGAGAAAAAACGAACAGCGGCAAGGCAACTTCTCCGAGTCCCGTTCTGCTCTGTGATTACAATCATTAGCGGCTGCACATAGCCAAAATAGCTCTGGTAACAACCTACATTCCTCTCAGGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU609727 lncRNA downstream 2770 68505207 ~ 68507545 (-) True G538457
TU609720 lncRNA downstream 8876 68496230 ~ 68501439 (-) True G538451
TU609704 lncRNA downstream 45315 68464571 ~ 68465000 (-) True G538440
TU609674 lncRNA downstream 76633 68432656 ~ 68433682 (-) True LOC110526422
TU609626 lncRNA downstream 89748 68418811 ~ 68420567 (-) True G538371
TU609729 lncRNA upstream 28912 68545593 ~ 68545875 (-) True G538459
TU609993 lncRNA upstream 94808 68611489 ~ 68611707 (-) True G538665
TU610012 lncRNA upstream 113303 68629984 ~ 68636665 (-) True G538674
TU610018 lncRNA upstream 124992 68641673 ~ 68644591 (-) True G538678
TU610041 lncRNA upstream 165170 68681851 ~ 68682214 (-) True G538698
XR_005052222.1 mRNA downstream 70791 68433145 ~ 68439524 (-) False LOC110526422
XM_036980810.1 mRNA downstream 110341 68298165 ~ 68399974 (-) False LOC110526419
XM_036980809.1 mRNA downstream 110355 68298165 ~ 68399960 (-) False LOC110526419
XM_036980812.1 mRNA downstream 110356 68298165 ~ 68399959 (-) False LOC110526419
XM_036980811.1 mRNA downstream 110359 68298165 ~ 68399956 (-) False LOC110526419
XR_002473954.2 mRNA upstream 79450 68596131 ~ 68609175 (-) True LOC110526433
XM_021607411.2 mRNA upstream 106753 68623434 ~ 68627219 (-) False pigb
XM_036980826.1 mRNA upstream 106753 68623434 ~ 68627219 (-) False pigb
XM_036980827.1 mRNA upstream 106753 68623434 ~ 68627301 (-) False pigb
XM_021607410.2 mRNA upstream 106753 68623434 ~ 68627383 (-) False pigb
TU609527 other downstream 365408 68142251 ~ 68144907 (-) True G538277
TU607613 other downstream 1960341 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 2005290 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 2228696 66277202 ~ 66281619 (-) False LOC110526379
TU607101 other downstream 2234026 66262486 ~ 66276289 (-) True G536183
TU610131 other upstream 290732 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 432839 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 486062 69002743 ~ 69005665 (-) True G539306
TU610933 other upstream 756437 69273118 ~ 69287090 (-) False LOC110526462
TU610935 other upstream 756437 69273118 ~ 69289496 (-) False LOC110526462

Expression Profile