RNA id: TU609152



Basic Information


Item Value
RNA id TU609152
length 708
lncRNA type intronic
GC content 0.40
exon number 2
gene id G538011
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68517754 ~ 68525267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCTTAACCCCAGTGCCTCCAGTTTGGAGATTAGGAGACAGTAGTTAACTGTATCAAAGGCCTTCTGTAGGTCAAGCAGTACCATTCCACAcagatttccctcatcaatctcttTCCTGATGAAGTCAGTCAAGTAAAGTAGACCTGAATCAGTGGAGTATGTTTTTCTAAAACCTGACTGAAAATCATACATTAGACCCTGTTTGTTAACATATTCATACATTTGCTCATGTACAACTCTCCATGATCTTTGATGTTACAGAggatagatacaggcctataattCCCAGGGTCAGATTTTATCCCTTTCTTATACAGAGGTATAACTTTAGCTTGTTTCATGTCCCTGGGAAAGGTACCTTGTTCGTGAGAGAGATTAACGATATGCATAGTACAAGGGCCAATTTGCTCAGCAGAATCTATAAGAAACCGTGCAGGAATATTATCCAGGTCTGTGGCTTTGGAGTATTTAAGCTCTTCCAGCATACTGACTATTTTGGCTGTTTCTACCTTTGCAAAAAGAAAGAGTTTGGCTGAACCCCTAACTCTACATAATACTTTTTGACTTGGTTGCTTCCATACAAACCAGAacagaagtaaaaaataaaagttgaATTCATTGTCAACCTCTGCtttttcatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU609137 lncRNA upstream 68859 68445524 ~ 68448895 (+) True G538001
TU608977 lncRNA upstream 279648 68237634 ~ 68238106 (+) True G537877
TU608954 lncRNA upstream 298464 68219053 ~ 68219290 (+) True G537857
TU608948 lncRNA upstream 304296 68213150 ~ 68213458 (+) True G537851
TU608921 lncRNA upstream 326326 68155288 ~ 68191428 (+) True G537826
TU609149 lncRNA downstream 21889 68547156 ~ 68547476 (+) True G538008
TU609151 lncRNA downstream 23865 68549132 ~ 68549490 (+) True G538010
TU609803 lncRNA downstream 101178 68626445 ~ 68626777 (+) True G538507
TU609853 lncRNA downstream 170440 68695707 ~ 68695910 (+) True G538554
TU609854 lncRNA downstream 171608 68696875 ~ 68697228 (+) True G538555
XM_036980818.1 mRNA upstream 33035 68441334 ~ 68484719 (+) False LOC110526423
XM_036980822.1 mRNA downstream 25633 68550900 ~ 68595583 (+) True LOC110526426
XM_021607414.2 mRNA downstream 71851 68597118 ~ 68603453 (+) True LOC110526429
XM_021607402.2 mRNA downstream 80329 68605596 ~ 68623796 (+) False LOC110526427
XM_021607401.2 mRNA downstream 87044 68612311 ~ 68623796 (+) False LOC110526427
XM_021607400.2 mRNA downstream 87048 68612315 ~ 68623796 (+) False LOC110526427
TU608686 other upstream 750141 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 761136 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1407126 67109676 ~ 67110628 (+) True G537032
TU608056 other upstream 1412846 67104411 ~ 67104908 (+) True G537029
TU608055 other upstream 1412892 67104411 ~ 67104862 (+) False G537029
TU609823 other downstream 154110 68679377 ~ 68681652 (+) True LOC110526436
TU609862 other downstream 179131 68704398 ~ 68704696 (+) True G538561
TU609930 other downstream 285852 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 380778 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 470816 68996083 ~ 69002828 (+) True G538877

Expression Profile