RNA id: TU609864



Basic Information


Item Value
RNA id TU609864
length 236
lncRNA type intronic
GC content 0.40
exon number 1
gene id G538563
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68705188 ~ 68705423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccgtttactatgagactcgaaattaagttaaagtgcatcttgtttccaatgattatccttgagatgtttctacaacttgattggagtccacctgtgatatattcaattgattggacatgatttggaaaggcaccccggtttatataaggtcccacagttgacagtacatgtcaaagcaaaaaccaagtcatgaggtcgaaggaattgtccgtagagctctgatacaggattgtgtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU609863 lncRNA upstream 85 68704765 ~ 68705103 (+) True G538562
TU609860 lncRNA upstream 2222 68702625 ~ 68702966 (+) True G538559
TU609854 lncRNA upstream 7960 68696875 ~ 68697228 (+) True G538555
TU609853 lncRNA upstream 9278 68695707 ~ 68695910 (+) True G538554
TU609803 lncRNA upstream 78411 68626445 ~ 68626777 (+) True G538507
TU609865 lncRNA downstream 1496 68706919 ~ 68707300 (+) True G538564
TU609868 lncRNA downstream 1986 68707409 ~ 68709628 (+) True G538565
TU610152 lncRNA downstream 140135 68845558 ~ 68845766 (+) True G538785
TU610155 lncRNA downstream 142617 68848040 ~ 68848328 (+) True G538788
TU610167 lncRNA downstream 153868 68859291 ~ 68859533 (+) True G538799
XR_002473955.2 mRNA upstream 23513 68679317 ~ 68681675 (+) False LOC110526436
XM_021607420.2 mRNA upstream 40796 68644828 ~ 68664392 (+) True LOC110526434
XM_021607418.2 mRNA upstream 60597 68640790 ~ 68644591 (+) True LOC110526432
XM_021607415.2 mRNA upstream 64575 68630014 ~ 68640613 (+) False LOC110526430
XM_021607435.2 mRNA downstream 70051 68775474 ~ 68780317 (+) True LOC110526444
XM_021607440.2 mRNA downstream 111516 68816939 ~ 68818769 (+) True LOC110526448
LOC110526954 mRNA downstream 143248 68848671 ~ 68856233 (+) True LOC110526954
XM_021607442.2 mRNA downstream 176167 68881590 ~ 68899511 (+) True LOC110526451
XM_021607445.2 mRNA downstream 217415 68922838 ~ 68936761 (+) True LOC110526452
TU609862 other upstream 492 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 23536 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 937575 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 948570 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1594560 67109676 ~ 67110628 (+) True G537032
TU609930 other downstream 105696 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 200622 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 290660 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 306183 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 656218 69361641 ~ 69367642 (+) True G539068

Expression Profile