RNA id: TU610059



Basic Information


Item Value
RNA id TU610059
length 230
lncRNA type intronic
GC content 0.40
exon number 1
gene id G538715
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68705194 ~ 68705423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacacaatcctgtatcagagctctacggacaattccttcgacctcatgacttggtttttgctttgacatgtactgtcaactgtgggaccttatataaaccggggtgcctttccaaatcatgtccaatcaattgaatatatcacaggtggactccaatcaagttgtagaaacatctcaaggataatcattggaaacaagatgcactttaacttaatttcgagtctcatagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU610058 lncRNA downstream 28 68704941 ~ 68705166 (-) True G538714
TU610057 lncRNA downstream 738 68704247 ~ 68704456 (-) True G538713
TU610056 lncRNA downstream 1217 68703748 ~ 68703977 (-) True G538712
TU610045 lncRNA downstream 8216 68696208 ~ 68696978 (-) True G538701
TU610041 lncRNA downstream 22980 68681851 ~ 68682214 (-) True G538698
TU610063 lncRNA upstream 6003 68711426 ~ 68794928 (-) True G538719
TU610166 lncRNA upstream 152944 68858367 ~ 68858791 (-) True G538798
TU610168 lncRNA upstream 153809 68859232 ~ 68859489 (-) True G538800
TU610219 lncRNA upstream 189565 68894988 ~ 68898434 (-) True G538848
TU610733 lncRNA upstream 205171 68910594 ~ 68910827 (-) True G539287
XM_021604935.2 mRNA downstream 9459 68683171 ~ 68695735 (-) False tradd
XM_021604936.2 mRNA downstream 9489 68683171 ~ 68695705 (-) False tradd
XM_036979131.1 mRNA downstream 18423 68683171 ~ 68686771 (-) False tradd
NM_001124639.2 mRNA downstream 19659 68683209 ~ 68685535 (-) True tradd
XM_021607422.2 mRNA downstream 27492 68665174 ~ 68677702 (-) True LOC110526435
XM_021607432.2 mRNA upstream 1947 68707370 ~ 68713633 (-) True LOC110526442
XM_036980830.1 mRNA upstream 8630 68714053 ~ 68720434 (-) True LOC110526441
XM_021607423.2 mRNA upstream 18628 68724051 ~ 68729230 (-) True LOC110526437
XM_021607424.2 mRNA upstream 24521 68729944 ~ 68743853 (-) True LOC110526438
XM_021607428.2 mRNA upstream 39241 68744664 ~ 68759919 (-) False LOC110526439
TU609730 other downstream 188513 68510315 ~ 68516681 (-) True G538460
TU609527 other downstream 560287 68142251 ~ 68144907 (-) True G538277
TU607613 other downstream 2155220 66549367 ~ 66549974 (-) True G536630
TU607649 other downstream 2200169 66500388 ~ 66505025 (-) True LOC110526387
TU607202 other downstream 2423575 66277202 ~ 66281619 (-) False LOC110526379
TU610131 other upstream 101990 68807413 ~ 68811230 (-) True LOC110526447
TU610756 other upstream 244097 68949520 ~ 68953664 (-) True LOC110526455
TU610759 other upstream 297320 69002743 ~ 69005665 (-) True G539306
TU610933 other upstream 567695 69273118 ~ 69287090 (-) False LOC110526462
TU610935 other upstream 567695 69273118 ~ 69289496 (-) False LOC110526462

Expression Profile