RNA id: TU609865



Basic Information


Item Value
RNA id TU609865
length 382
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G538564
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68706919 ~ 68707300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTTCACTCCCCTCTTCACATCTTCGTCCTCGAGTAGTGCATAAAGTTCTGCTCGCTCTTCacttttctttctcttctttccttTCTCGCTATCGTTTACAATTAATTTTAGTATAAATTAGTTTGATGTTCATTgaaagagatcagggtccagagtagcGCTGAGGTCCTTCCGTTTTATTTGAGAGGCCTGCGCAACCATCGATATTCATTGTCAGATATgacagcagatctctttgtttcttgggacctagaactagcatcttttctgtccgagtttaaaagttaaGCATTTGCCACCATCTACTTCCTTATGTCTAAAATAGAGGCTTTCAGGTTAGGCCATTTTGTGTCGTCAatatagcagtgaaagttgacattg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU609864 lncRNA upstream 1496 68705188 ~ 68705423 (+) True G538563
TU609863 lncRNA upstream 1816 68704765 ~ 68705103 (+) True G538562
TU609860 lncRNA upstream 3953 68702625 ~ 68702966 (+) True G538559
TU609854 lncRNA upstream 9691 68696875 ~ 68697228 (+) True G538555
TU609853 lncRNA upstream 11009 68695707 ~ 68695910 (+) True G538554
TU609868 lncRNA downstream 109 68707409 ~ 68709628 (+) True G538565
TU610152 lncRNA downstream 138258 68845558 ~ 68845766 (+) True G538785
TU610155 lncRNA downstream 140740 68848040 ~ 68848328 (+) True G538788
TU610167 lncRNA downstream 151991 68859291 ~ 68859533 (+) True G538799
TU610226 lncRNA downstream 193495 68900795 ~ 68901024 (+) True G538851
XR_002473955.2 mRNA upstream 25244 68679317 ~ 68681675 (+) False LOC110526436
XM_021607420.2 mRNA upstream 42527 68644828 ~ 68664392 (+) True LOC110526434
XM_021607418.2 mRNA upstream 62328 68640790 ~ 68644591 (+) True LOC110526432
XM_021607415.2 mRNA upstream 66306 68630014 ~ 68640613 (+) False LOC110526430
XM_021607435.2 mRNA downstream 68174 68775474 ~ 68780317 (+) True LOC110526444
XM_021607440.2 mRNA downstream 109639 68816939 ~ 68818769 (+) True LOC110526448
LOC110526954 mRNA downstream 141371 68848671 ~ 68856233 (+) True LOC110526954
XM_021607442.2 mRNA downstream 174290 68881590 ~ 68899511 (+) True LOC110526451
XM_021607445.2 mRNA downstream 215538 68922838 ~ 68936761 (+) True LOC110526452
TU609862 other upstream 2223 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 25267 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 939306 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 950301 67754556 ~ 67756618 (+) True G537606
TU608066 other upstream 1596291 67109676 ~ 67110628 (+) True G537032
TU609930 other downstream 103819 68811119 ~ 68811890 (+) True G538607
TU610240 other downstream 198745 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 288783 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 304306 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 654341 69361641 ~ 69367642 (+) True G539068

Expression Profile