RNA id: TU610238



Basic Information


Item Value
RNA id TU610238
length 251
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G538857
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68905156 ~ 68905406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTCCCTGTGCACgccctagatagtcgaccattagggtcagggctgattagggaggccaccaCTCCACTAGAcatggttacgcaggagggtcataaggagagaatcagtcacttccttattgattctcctgtgtTTCCCGTGtttctccttcctagggtaccgcatttccacttcaggggtggagatggagagtgaccgcatttcagccgtgcgtaattggccgactcccaccacggtaaaggaagtgcag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU610237 lncRNA upstream 302 68904543 ~ 68904854 (+) True G538856
TU610228 lncRNA upstream 1731 68902381 ~ 68903425 (+) False G538852
TU610230 lncRNA upstream 1731 68902418 ~ 68903425 (+) False G538852
TU610229 lncRNA upstream 1731 68902573 ~ 68903425 (+) True G538852
TU610226 lncRNA upstream 4132 68900795 ~ 68901024 (+) True G538851
TU610239 lncRNA downstream 212 68905618 ~ 68905910 (+) True G538858
TU610244 lncRNA downstream 5188 68910594 ~ 68910832 (+) True G538863
TU610245 lncRNA downstream 5815 68911221 ~ 68911537 (+) True G538864
TU610248 lncRNA downstream 8367 68913773 ~ 68914036 (+) True G538867
TU610250 lncRNA downstream 10650 68916056 ~ 68916300 (+) True G538869
XM_021607442.2 mRNA upstream 5645 68881590 ~ 68899511 (+) True LOC110526451
LOC110526954 mRNA upstream 48923 68848671 ~ 68856233 (+) True LOC110526954
XM_021607440.2 mRNA upstream 86387 68816939 ~ 68818769 (+) True LOC110526448
XM_021607435.2 mRNA upstream 124839 68775474 ~ 68780317 (+) True LOC110526444
XR_002473955.2 mRNA upstream 223481 68679317 ~ 68681675 (+) False LOC110526436
XM_021607445.2 mRNA downstream 17432 68922838 ~ 68936761 (+) True LOC110526452
XM_021607446.2 mRNA downstream 33236 68938642 ~ 68946874 (+) True LOC110526454
XR_005052454.1 mRNA downstream 49859 68955265 ~ 68955385 (+) True LOC118965123
XM_036980843.1 mRNA downstream 59649 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA downstream 59656 68965062 ~ 68977010 (+) True LOC110526457
TU609930 other upstream 93266 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 200460 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 223504 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1137543 67766756 ~ 67767613 (+) True G537617
TU608672 other upstream 1148538 67754556 ~ 67756618 (+) True G537606
TU610240 other downstream 639 68906045 ~ 68906847 (+) True G538859
TU610258 other downstream 90677 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 106200 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 456235 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1110936 70016342 ~ 70019477 (+) True G539959

Expression Profile