RNA id: TU610244



Basic Information


Item Value
RNA id TU610244
length 239
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G538863
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68910594 ~ 68910832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggcttcacgcaagatctcaccccgtggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacgggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgcca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU610239 lncRNA upstream 4684 68905618 ~ 68905910 (+) True G538858
TU610238 lncRNA upstream 5188 68905156 ~ 68905406 (+) True G538857
TU610237 lncRNA upstream 5740 68904543 ~ 68904854 (+) True G538856
TU610228 lncRNA upstream 7169 68902381 ~ 68903425 (+) False G538852
TU610245 lncRNA downstream 389 68911221 ~ 68911537 (+) True G538864
TU610248 lncRNA downstream 2941 68913773 ~ 68914036 (+) True G538867
TU610250 lncRNA downstream 5224 68916056 ~ 68916300 (+) True G538869
TU610288 lncRNA downstream 50383 68961215 ~ 68961454 (+) True G538906
TU610289 lncRNA downstream 50833 68961665 ~ 68961869 (+) True G538907
XM_021607442.2 mRNA upstream 11083 68881590 ~ 68899511 (+) True LOC110526451
LOC110526954 mRNA upstream 54361 68848671 ~ 68856233 (+) True LOC110526954
XM_021607440.2 mRNA upstream 91825 68816939 ~ 68818769 (+) True LOC110526448
XM_021607435.2 mRNA upstream 130277 68775474 ~ 68780317 (+) True LOC110526444
XR_002473955.2 mRNA upstream 228919 68679317 ~ 68681675 (+) False LOC110526436
XM_021607445.2 mRNA downstream 12006 68922838 ~ 68936761 (+) True LOC110526452
XM_021607446.2 mRNA downstream 27810 68938642 ~ 68946874 (+) True LOC110526454
XR_005052454.1 mRNA downstream 44433 68955265 ~ 68955385 (+) True LOC118965123
XM_036980843.1 mRNA downstream 54223 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA downstream 54230 68965062 ~ 68977010 (+) True LOC110526457
TU610240 other upstream 3747 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 98704 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 205898 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 228942 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1142981 67766756 ~ 67767613 (+) True G537617
TU610258 other downstream 85251 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 100774 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 450809 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1105510 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1125362 70036194 ~ 70039507 (+) True LOC110525047

Expression Profile