RNA id: TU610248



Basic Information


Item Value
RNA id TU610248
length 264
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G538867
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68913773 ~ 68914036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggtagggatgtcccaaggaacCCAGATTGCACAGACCCTGCAGGATCATGCGAGCAACTGTTTAACACTTGTAGGACAATTGCACCCCCTCGTGGTGATATATATTACTGCACACACTCAAAGCACGAGATCTCATTTGACATGAGCGCTTTCCCATGGTAGTGAATACCTGTAGGCCTACACTGCAGCCTGAAATCAACAGGATCCAGAAATGGTTCATGTGATGGTGGTTTTAGTCTCTTTTATAAACAATGGTGATAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU610245 lncRNA upstream 2236 68911221 ~ 68911537 (+) True G538864
TU610244 lncRNA upstream 2941 68910594 ~ 68910832 (+) True G538863
TU610239 lncRNA upstream 7863 68905618 ~ 68905910 (+) True G538858
TU610238 lncRNA upstream 8367 68905156 ~ 68905406 (+) True G538857
TU610237 lncRNA upstream 8919 68904543 ~ 68904854 (+) True G538856
TU610250 lncRNA downstream 2020 68916056 ~ 68916300 (+) True G538869
TU610288 lncRNA downstream 47179 68961215 ~ 68961454 (+) True G538906
TU610289 lncRNA downstream 47629 68961665 ~ 68961869 (+) True G538907
TU610259 lncRNA downstream 76802 68990838 ~ 68992839 (+) True G538878
TU610315 lncRNA downstream 104813 69018849 ~ 69019053 (+) True G538925
XM_021607442.2 mRNA upstream 14262 68881590 ~ 68899511 (+) True LOC110526451
LOC110526954 mRNA upstream 57540 68848671 ~ 68856233 (+) True LOC110526954
XM_021607440.2 mRNA upstream 95004 68816939 ~ 68818769 (+) True LOC110526448
XM_021607435.2 mRNA upstream 133456 68775474 ~ 68780317 (+) True LOC110526444
XR_002473955.2 mRNA upstream 232098 68679317 ~ 68681675 (+) False LOC110526436
XM_021607445.2 mRNA downstream 8802 68922838 ~ 68936761 (+) True LOC110526452
XM_021607446.2 mRNA downstream 24606 68938642 ~ 68946874 (+) True LOC110526454
XR_005052454.1 mRNA downstream 41229 68955265 ~ 68955385 (+) True LOC118965123
XM_036980843.1 mRNA downstream 51019 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA downstream 51026 68965062 ~ 68977010 (+) True LOC110526457
TU610240 other upstream 6926 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 101883 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 209077 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 232121 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1146160 67766756 ~ 67767613 (+) True G537617
TU610258 other downstream 82047 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 97570 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 447605 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1102306 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1122158 70036194 ~ 70039507 (+) True LOC110525047

Expression Profile