RNA id: TU610288



Basic Information


Item Value
RNA id TU610288
length 240
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G538906
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68961215 ~ 68961454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tccttatatgaactgtaactcagtaaaatctttgaaattgttacatgttgcgtttatatttttgttcagtatacttacCCATGAATGTGCACTGTTGAAAATAAATCTCCACTCAATGTTATTGCTAGCACTTGCCACCAAAATAAAGTGTACCTTCTGGGGTAACTTGGTCATccgagatgaggagatgaggagaaacACACTATTTCAAATGTAATGTTTGCCTAAGTACAATGTAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU610250 lncRNA upstream 44915 68916056 ~ 68916300 (+) True G538869
TU610248 lncRNA upstream 47179 68913773 ~ 68914036 (+) True G538867
TU610245 lncRNA upstream 49678 68911221 ~ 68911537 (+) True G538864
TU610244 lncRNA upstream 50383 68910594 ~ 68910832 (+) True G538863
TU610239 lncRNA upstream 55305 68905618 ~ 68905910 (+) True G538858
TU610289 lncRNA downstream 211 68961665 ~ 68961869 (+) True G538907
TU610259 lncRNA downstream 29384 68990838 ~ 68992839 (+) True G538878
TU610315 lncRNA downstream 57395 69018849 ~ 69019053 (+) True G538925
TU610321 lncRNA downstream 81167 69042621 ~ 69044027 (+) True G538931
TU610273 lncRNA downstream 82616 69044070 ~ 69144935 (+) True G538891
XR_005052454.1 mRNA upstream 5830 68955265 ~ 68955385 (+) True LOC118965123
XM_021607446.2 mRNA upstream 14341 68938642 ~ 68946874 (+) True LOC110526454
XM_021607445.2 mRNA upstream 24454 68922838 ~ 68936761 (+) True LOC110526452
XM_021607442.2 mRNA upstream 61704 68881590 ~ 68899511 (+) True LOC110526451
LOC110526954 mRNA upstream 104982 68848671 ~ 68856233 (+) True LOC110526954
XM_036980843.1 mRNA downstream 3601 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA downstream 3608 68965062 ~ 68977010 (+) True LOC110526457
XM_036980841.1 mRNA downstream 17443 68978897 ~ 68988139 (+) True LOC110526456
XM_036981775.1 mRNA downstream 45601 69007055 ~ 69018414 (+) False LOC110526955
XM_036980844.1 mRNA downstream 69428 69030882 ~ 69133616 (+) False LOC110526458
TU610240 other upstream 54368 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 149325 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 256519 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 279563 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1193602 67766756 ~ 67767613 (+) True G537617
TU610258 other downstream 34629 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 50152 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 400187 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1054888 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1074740 70036194 ~ 70039507 (+) True LOC110525047

Expression Profile