RNA id: TU610259


Basic Information

Item Value
RNA id TU610259
length 2002
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G538878
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68990838 ~ 68992839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTGTTAAAAACAGTAATAAAGTGATTTAGAGCCGATTCAGAATCTGGTATGGCTTAGATACTATTAAGATCACCATTGAGATCATGTAAAAatgctttacatttttttaatttctCCTTGTAATGAAGCATTGTTTTGCACTATGAGTCCTAACATCTCTAATACAAAAAAATAGGACAGTGATCACTAATATCCAGGGAGGAAACATCACTAGCCACACATTTCTCTGGAGTATTTGTAAACATAAGATCAATTAATGTTGATTTAGTAGAATCTCTCAGATTTGGACATGTGGGTTTGGTAATCAACTGTGAGGTTTAGGTTGTTACAAAAATCCTTTAAATAGTCGGAGTCTTGGGTTCCCCAGGACAGGTTAAAGTCACCTATGACAAACTATTCAGAAGTAGACAAATAAGCTATTAAGTCAGTGAGACTAATTAACAAACATTTCTTAGCAGGGGAGGGCGGTAGACTCCCAGAACAGTTACTTTAGAATTACAACTTAGTTGAAGACTTAAATTCAGATTGTTTAGGACTCGCCTTTAAAAGAGacatagaaaggatatttttgtATAGATAGCAACACCACTTTTGCCCATCCTATCAGCCCTGAAACTTGAAAACCATCAATAGTAACCTCAGAATCCACAATTTTCTCAGATAACCATGTTTCTGATAAACAAAAAATATCTGGATCTGCCTGCGAAGCCCAGATCTTGATGTAGTCCATTTTTTGTCAAAAGGCTGCGAACATTTAGGTGCATGAATTTAAAACCTTTTCGTGCTTTGAAATCACTGGGAGTGTGTCAAAATAAAAGCTGGATCATTACCTGCCAACCTATTATTCATAACCAAAGGCTGCAACGCAATGGAAATTAAATTGACCCCAATCCGCCCTGCATATTGTTAATCTATTACTGTTTGCTGGGGGCGTAATAATAGTAGGGATTACCTGAGACAGTAGCAGCTTCACTTTACAATACAAATTTGTAAAAGTGCTAATGGCAGTACCCTCCTTTCTAGACATAGCAAGGATAGTAAAAGAGCATAACAATCAATTTCTTAGAGCTGCCTTGTAGTGATTAGATAGTGTCCACGGGACAATGTGATTTGAGTGAATTCCATCATCCCTGAAAAGTATTTTCGGTTGCCAAAAGGTAtcaaaattgtcaataaaagtAATTCCTGAGGTTTGACAGTAGACTTTCAGCCAGTCATGGAGTGCTAGCAGTTTCCTGAATCTGCCACTTCTATGACCCAgtggaggaagagggacagagatgaACGGACACTTATTTAAGTCTTTCAGCTTGTTAACAAGGTCTATAAAATGTGTTTTAAGGTGCTCCGATCTGGCCAACTTATCTCTTAAGGATCtgacccttttttcaattttcgcctaaaatgacatacccaaatctaactgcctgtagctcaggacctgaagcaaggatatgcatattcttgataccatttgaaaggaaacactttgaagtttgtggaaatgtaaaatgaatgtaggagaatataacatattagatctggtaaaagataatacaaagaaaaaaacctGCTTTTTTtattaccatcatctttgaaatgcaagagaaaggccataatgtattattccagcccagccacaatttacattttggccactagacggcagcagtgtatgtgcaaagttttagactgatctgttcaaaatgttgtatcaagactgcccaaaagggcctattggtttattaatacattttcaagttcctaattgtgcactctcctcaaacaatagcatggtattatttcactgtaaaagctaatgtaaattggacagtgcagttagaattttaggaatttaagctttctgcccatatcagatatgtctatgtcctgggaaatgttcatgttacttacaacctcatgctaatcacattagcctacgttagcttatCCATTCAGTGGGGGGGACACCGATTCTGTAGAGGTTAATGTAATTTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610289 lncRNA upstream 28969 68961665 ~ 68961869 (+) True G538907
TU610288 lncRNA upstream 29384 68961215 ~ 68961454 (+) True G538906
TU610250 lncRNA upstream 74538 68916056 ~ 68916300 (+) True G538869
TU610248 lncRNA upstream 76802 68913773 ~ 68914036 (+) True G538867
TU610245 lncRNA upstream 79301 68911221 ~ 68911537 (+) True G538864
TU610315 lncRNA downstream 26010 69018849 ~ 69019053 (+) True G538925
TU610321 lncRNA downstream 49782 69042621 ~ 69044027 (+) True G538931
TU610273 lncRNA downstream 51231 69044070 ~ 69144935 (+) True G538891
TU610370 lncRNA downstream 222728 69215567 ~ 69216547 (+) True G538977
TU610397 lncRNA downstream 248454 69241293 ~ 69274586 (+) False G538991
XM_036980841.1 mRNA upstream 2699 68978897 ~ 68988139 (+) True LOC110526456
XM_036980843.1 mRNA upstream 13828 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA upstream 13828 68965062 ~ 68977010 (+) True LOC110526457
XR_005052454.1 mRNA upstream 35453 68955265 ~ 68955385 (+) True LOC118965123
XM_021607446.2 mRNA upstream 43964 68938642 ~ 68946874 (+) True LOC110526454
XM_036981775.1 mRNA downstream 14216 69007055 ~ 69018414 (+) False LOC110526955
XM_036980844.1 mRNA downstream 38043 69030882 ~ 69133616 (+) False LOC110526458
XM_036980845.1 mRNA downstream 38043 69030882 ~ 69133616 (+) True LOC110526458
XM_036980847.1 mRNA downstream 155491 69148330 ~ 69189966 (+) False LOC110526459
XM_021607451.2 mRNA downstream 155492 69148331 ~ 69189966 (+) False LOC110526459
TU610240 other upstream 83991 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 178948 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 286142 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 309186 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1223225 67766756 ~ 67767613 (+) True G537617
TU610258 other downstream 3244 68996083 ~ 69002828 (+) True G538877
TU610304 other downstream 18767 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 368802 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1023503 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1043355 70036194 ~ 70039507 (+) True LOC110525047

Expression Profile