RNA id: TU610258


Basic Information

Item Value
RNA id TU610258
length 6746
RNA type TUCP
GC content 0.49
exon number 1
gene id G538877
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68996083 ~ 69002828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctggcagagttgtgcagactcaggacaactgagctttggcggaatatgcagatttaaagaggagtctgtaatttgctttgtaatgatcatgattttctcctcaaagaagttaatgaatttaatactgctgaagtgaaagccatcctctcttggggaatgctgctttttagttagctttgcgacagtatcaaaaatacatttcggattgttcttattttcctcaattaagttggaaaaataggatgatcgagcagcagtgagggctcttcgatactgcttggtactgtctttccaagctaatcGATAGACTTCCAGTTTGAtgtggcgccatttccattccaattttctggaagcttgcttcagagcttgggtattttctgtataccagggagctagtttcttatgacaaatgttttttgtttttaggggtgcaactgcatctagggtgttgcgcaaggttaaattgagttcctcagttaggtggttaactgattttgtGCTCTGACGTTCTTGGGTAGGCAgatggagtctggaagggcatcaaggaatctttgggttgtctaagaatttatagcacgacttttgatgctccttggttggggtctgagcagattatttgttgcgattgcaaacgtaataaaatggtggtcagatatttccaggattatgaggaaaaacattaagatccacaacatttattccaagggacaaaactaggtccagagtatgactgtgacagtgagtaggtccagagacatgttggacaaaacccactgagtcgatgatggctccgaaagccttttggagtgggtctgtggacttttccatgtgaatattaaaatcaccaaaaatttgaatattatctgttATGACtgcaaggtccgataggaattcagggaactcagtgaggaacgctgtatatggcccaggaggcctgtaaacagtagctataaaaagtgattgagtaggctgcatagatttcatgactagaagctcaaaagacaaaaaagtttaaaaaaagttgtcaattgaaatttgctatcgtaaatgttagcaacacctccgcctttgcgggatgcacgggggatatggtcactaatgtaaccaggaggtgaggcctcatttaacacagtaaattcatcaggcttaagccatgtttcagtcaggccaatcacatcaagattatgatcagtgattagttcattgactataactgcctttgaagtgaggtaactaacattaagtagccctattttgagatgtgaggtatcacgatctctttcaataatgacaggaatggaggaggtctttatccgagtgagattgctaaggccaacaccgccatgtttagttttgcccaaccttgGCCGATCCACatacacggtctcaatggggatagctgagctgactacactgtgCTTGTGGCAGACttcactaagctggcaggctggctaacagcctggcctgcaccctatttcattgtggagatagaggagttagagccctgtctatgttggtagataagatgagagcacccctccagctaggatggagtccgtcactcctcagcaggccaggtttgGTCCTGTTTGTTTgccccagaaagagggccaattatctacaaattatatcttttgggaggggcagaaaacagttttcaaccagcgattgagctgtgagactctgctgtagagctcatcactccccctaactgggagggggccagagataattactcGATgcagacacatctttctagctgatttacacgctgaagctatgttgcgcttggtgacctctgactgtttcatcctaacatcgtgccgacgtggataacttcagattagccttaacgtcggtagccctacCCCCTGATAGACAGaatatgatcgctggatgattagttttaagtctaatactgcgggtaatggagtcgccaatgactagggttttcaatttgtcagagctaacggtgggaagcttcggcgtctcagacccagTAACGGGAgcagtagagacaagagaaggctcggcctcagactccgactcgctgcttaatggggaaaactggttgaaagtttctgtcggctgaatgagcgagcATTCCTGTAGcctttccctccagaagccatgagaaagttgtccggctgagGGGCCCGTgcaaggggatttatactaatgttactatctgtacttactggtggcacagatgctgtttcatcctttcctacacggaaattacccttgcctaacgcttgcgtctgaagctgggcttgcagcacagctatcctcgcgggaaggcgatcgttctcctgtaaattatgagtacagcgactgcaattagaaggcataatgttaatgttactacttagcttcgattgttggaggtcctgacgaaccatgtccagataaagcgccCGGAGTGAAATAtttgagtgagggaaaaactaaaaatataaacggtaattaaaaagaaaaaaacgtaaagttgtcaggtagcaaagtaaggttggcaataAAACGCACAGCCATtattagggaatgtaaaccaggtgtgctgggaacaagacaaaacaaatggaacaatgagAACATcaagcggcgatggctagaaagccggtgacgtcgaccgctgaacgccgcccaaacaaggagaggagccgacttcggcggaagtcgggacagtacacccccccccctgaTGCGCGGCTCCAGCGGAGCgaccgacaccggcctcggggacgacccagatggtgaggcgcagggcgatccggccGGCGACGGTGGAACTCCCtgcacccagcacctctcctccggaccgtacccctcccactccatgaggtactgaaggccccccgCCCAACGCCTCGAATCCAGGGTGGAACGAACGGAGCATGCCGGGTccccctcgatgtctagagggggcggaggaacctcccatACCTCAGATTCCTGGAGCGGACCAGCCgtcaccggcctgaggagagatacATGGAACGatgggttaatacggtaatcggggggaagctgtaacctgtaacacacctcgttcactctcctcaggactttgaatggccccataAACCGCGGGCcgagcttccggcagggcaggcggagggtcaggtttcgggtcgagacccggtcccccggtgcaaacaccGGGACCTCACTGCGGTGATGGTCTGCGCCCACTTTCTGGCGCAGCACGGCGCGCTGAAGGTGGACATGGGCGGCGTCCCATGTTTCCTCCGCGCTCCGGTACCAGTGgaccaccgcaggagcctcggtctgactctgatacCAAGGAGCCAGAACCCGCTGATACCCCAATACATACTGGAAGGGggtgaggttagtggaggagttgcggagcgagttctgggccatctctgcccagggcacgaatgctgcccactcccccggccaggcctggcaataggacctcagaaacctacccacatcctggtttactctctccacctgcccgttactctcggtgTGAAAACCTgaaggtaaggctgaccgagacccccagacgttccatgattGCCTTACTGAGACTCGACGTGAACTGGGGTCCCTGATCCCTGTAGTCccagaagacgtgtgtaaacaaggcctccgcagccagtagggccgtagggagaccgggcaaagggaggagatgacaggacttagaaaaatgatccacaacgaccaggatcgtagtgttaccctgtgagggaggaaaaACAGTCAGGAAATCTACcaacaggtgcgaccacggccgttgtggaacgggtaagggttgtagcttacctctgggcaggtgcctaggaaccttgcactgggcgcacaccgagcaggaggaaacataaaccctcacatccttagccaaagtgggccaccagtacttcccagtcagacagcgcaccgtccgaccgatccccggatgaccagaggagggtgatgtgTGGGCCCAGTAGATCAACTGGTCACGGACAGCAGATGGAATGTACAGACGCTCgacgggacactggaggggagcgggctctgtTCATTGTCCGCGTTCAGCTCCCACACGACCGGCActaccaggcaggaggccgggagtatgggagtcTGATCCAGGGgctgctcctctgtgtcatacatccgggacagtgcgtctgccttcatattctgggaacctggtctgtaggacagggtaaacacaaaacaggtaaagaacatggcccaccttgcctgatgaggattcagtctcctccgGATGTCCGGATGTcctccaggttgcggtggtcagtccagatgagaataGTGTGTTTCGCctcctcaagccaatgtctccacgctttcaacgctttaaccacagccaacagctcccggtcccccacatcatagttccgctctgccgggctgagcttcttcaagaagaaagcacaggggcggagcttcggtggcgtgccagagcgctgagagagcacggctcctatcccagcctcggacgcgtccacctccactatgaacgccaaagagggatccggatgggccagcacgggagccgaggtaaacagagctcttaggtgcccaaaagccctgtccgcctcaaccGACCACTGCAGATGTACaggaccccccttcagcagtgagctAATGGGACCAGCCACCTGGCCAAAACCACCGGATATGCAAACCCTAAAAACctctgcacctcctttaccgtggtgggagtcggccaattacgcacggctgaaatgcggtcactctccatctccacccctgatgtggaaatgcaataccctaggaaggagacggcctgctgaaagaacaggcatttctcagccttgacctACAGGTCATGCTCCGACAGTCGACCAAGTACCCTGCACACCAAgaacacatgctcggcgcgtgtagcggactatatcagaatgtcatcaatatacaccactacaccctgcccgtgcaagtcTGCTGACTCCATGGGTGGTGTAAATTTCTGTCAAGGTTGTGCGCTACTGAtacgaagtcaggtgcaggagagcagtgaGTTGTGATCAGGTGCACTTTTGTTTGGAAAAAGCACAAAAGACAGACGCAACCGTGTCAAAAATCCTCCAGCCACAGGTAAAAGTCAATAAGCGCGAAAACACTCACAAATATACACATGTATGACAAATACGTACAATGGGTCAAAATACGATACCCCGGGGGAAAAACAGTCTGGCTCATCACActaaacacgtaacaaaacaatttcacacaaagacatggggggggggaacagaggaataaaaacatgcagtgtgattagggaatgtaaatcaggtgtgcagggaacaagacaaaacaaatggaacaatggaGAACATGGAGcggtgatggctagaaagccggtgacgtcgaccgccgaacgctgcctgaacaaggagaggagccaacttcggcggaagtcgtgacacattgagactggtgttttgcgggtactatttaattttGAGGACCATTTGAGGACCTGtgaagcgtctgtttctcaaacttgacactaatgttcttgtcctctgcaccagggcctcctacccctctttctattctggttagagacagtttgcgctgttctttgaagggagtagtacacagcgttatatgagatcttcagtttcttggcaatatcTTTCATGGAATAGCCCttttttctcagaacaagaataggctgacgagtttcagaagaaagttctttgtttctagccattttgaggctgtaatcgaacccacaaatgctgatgctccagatactcaactagtctaaagaaggccaattttattgcttctttaataatcaggacgacagttttcagctgtgctaatgtTGGTCAATTTCTTCAACAGATGATCAGGTCTATATAATTATCAAACGTATATATATTGCTAGGAGAAAGGAAACACAGACTCTTTGTTTAAGTATTAAAATTATCCTTTAGTAATACAATTGTAGGCAGAAgttggtacagagtacagtatatgataGCTCTCCCCAGGTTCTGCAAAGTGTCTAAGATATCCTGTAACTTATATAGCCTCCCCAGTTCCCTTTGCGTGACTTTCCCTGGTAACAACATTTTAATGAATCTAACCTCCCCCTGACAGCAGCAACCATCTTGTCAGCAATTAAAAGCTCATAAGTGGGTTTGACCCGAAACTTGACCTTTCATCACAAGTATGTGGTCATAACAAGGTGAATGAATCTAAGCATCTTCTGATAGGTGGCTGTTTTCATCAGGCCTGTGGAAGCCTtgtgttctcagaaaaccagtcgtattctcagaacctcagacagCCACGGTGGGGCCCAGACAGGAGGAGTATGAGCGTAGGCGGTTTTCACCTTCTGATAGTGTCTGAAGGGCACAACACTCAAAACaggttttaacacacacacagaggtctccTGAGAGGAGTCCTTACAGTTTATCATAACAAAATGTATTAACCTTTTAAAAGGTATGAGGCCTTGGTTTAACCCCTTGTAGAGAGAATCTTTTGAgaatgttgcattgaaagtggctaatattcggttgattcgatcacaattgccacagtataGAGAAATGTTGATAGTGTAACAACGAAAACTCTAGAAATgtcagtgaagttcaatctcgggcttctctccctctgttggcTGATATTTCTTCTTTGCTGCAGTCCTGAGGGAGCTGCGTGGCAGTTTCGGGACTATTGCGTGCCCAtgtgcagcttagaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610259 lncRNA upstream 3244 68990838 ~ 68992839 (+) True G538878
TU610289 lncRNA upstream 34214 68961665 ~ 68961869 (+) True G538907
TU610288 lncRNA upstream 34629 68961215 ~ 68961454 (+) True G538906
TU610250 lncRNA upstream 79783 68916056 ~ 68916300 (+) True G538869
TU610248 lncRNA upstream 82047 68913773 ~ 68914036 (+) True G538867
TU610315 lncRNA downstream 16021 69018849 ~ 69019053 (+) True G538925
TU610321 lncRNA downstream 39793 69042621 ~ 69044027 (+) True G538931
TU610273 lncRNA downstream 41242 69044070 ~ 69144935 (+) True G538891
TU610370 lncRNA downstream 212739 69215567 ~ 69216547 (+) True G538977
TU610397 lncRNA downstream 238465 69241293 ~ 69274586 (+) False G538991
XM_036980841.1 mRNA upstream 7944 68978897 ~ 68988139 (+) True LOC110526456
XM_036980843.1 mRNA upstream 19073 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA upstream 19073 68965062 ~ 68977010 (+) True LOC110526457
XR_005052454.1 mRNA upstream 40698 68955265 ~ 68955385 (+) True LOC118965123
XM_021607446.2 mRNA upstream 49209 68938642 ~ 68946874 (+) True LOC110526454
XM_036981775.1 mRNA downstream 4227 69007055 ~ 69018414 (+) False LOC110526955
XM_036980844.1 mRNA downstream 28054 69030882 ~ 69133616 (+) False LOC110526458
XM_036980845.1 mRNA downstream 28054 69030882 ~ 69133616 (+) True LOC110526458
XM_036980847.1 mRNA downstream 145502 69148330 ~ 69189966 (+) False LOC110526459
XM_021607451.2 mRNA downstream 145503 69148331 ~ 69189966 (+) False LOC110526459
TU610240 other upstream 89236 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 184193 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 291387 68704398 ~ 68704696 (+) True G538561
TU609823 other upstream 314431 68679377 ~ 68681652 (+) True LOC110526436
TU608686 other upstream 1228470 67766756 ~ 67767613 (+) True G537617
TU610304 other downstream 8778 69011606 ~ 69011962 (+) True LOC110526955
TU610498 other downstream 358813 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 1013514 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 1033366 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1479122 70481950 ~ 70484368 (+) True G540179

Expression Profile